Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CDC45_RS02910 | Genome accession | NZ_CP021762 |
| Coordinates | 601946..602467 (+) | Length | 173 a.a. |
| NCBI ID | WP_011000516.1 | Uniprot ID | Q8Y1Y0 |
| Organism | Ralstonia pseudosolanacearum strain RS 476 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 596946..607467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDC45_RS02885 (CDC45_02860) | recX | 597325..597804 (+) | 480 | WP_011000511.1 | recombination regulator RecX | - |
| CDC45_RS02890 (CDC45_02865) | - | 598079..598705 (+) | 627 | WP_011000512.1 | DUF2889 domain-containing protein | - |
| CDC45_RS02895 (CDC45_02870) | sucC | 598772..599938 (+) | 1167 | WP_011000513.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| CDC45_RS02900 (CDC45_02875) | sucD | 600023..600904 (+) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| CDC45_RS02905 (CDC45_02880) | - | 601054..601752 (+) | 699 | WP_011000515.1 | TerC family protein | - |
| CDC45_RS02910 (CDC45_02885) | pilA | 601946..602467 (+) | 522 | WP_011000516.1 | pilin | Machinery gene |
| CDC45_RS02915 (CDC45_02890) | pilA | 602734..603240 (+) | 507 | WP_011000517.1 | pilin | Machinery gene |
| CDC45_RS02920 (CDC45_02895) | - | 603322..605055 (+) | 1734 | WP_043876542.1 | PglL family O-oligosaccharyltransferase | - |
| CDC45_RS02925 (CDC45_02900) | moaC | 605284..605760 (-) | 477 | WP_011000519.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17844.54 Da Isoelectric Point: 10.0311
>NTDB_id=195701 CDC45_RS02910 WP_011000516.1 601946..602467(+) (pilA) [Ralstonia pseudosolanacearum strain RS 476]
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
Nucleotide
Download Length: 522 bp
>NTDB_id=195701 CDC45_RS02910 WP_011000516.1 601946..602467(+) (pilA) [Ralstonia pseudosolanacearum strain RS 476]
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATTGGGATATTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATACTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATTGGGATATTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATACTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.705 |
100 |
0.526 |
| pilA2 | Legionella pneumophila str. Paris |
44.848 |
95.376 |
0.428 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.242 |
95.376 |
0.422 |
| comP | Acinetobacter baylyi ADP1 |
39.773 |
100 |
0.405 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.938 |
100 |
0.399 |