Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AM361_RS19765 Genome accession   NZ_CP021732
Coordinates   3813127..3813864 (-) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0114     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3808127..3818864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM361_RS19735 (AM361_19650) yfiL 3808285..3808650 (-) 366 WP_001314943.1 DUF2799 domain-containing protein -
  AM361_RS19740 (AM361_19655) aroF 3808860..3809930 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AM361_RS19745 (AM361_19660) tyrA 3809941..3811062 (+) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AM361_RS19750 (AM361_19665) pheA 3811105..3812265 (-) 1161 WP_020233815.1 bifunctional chorismate mutase/prephenate dehydratase -
  AM361_RS26395 pheL 3812364..3812411 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AM361_RS19755 (AM361_19670) raiA 3812515..3812856 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AM361_RS19765 (AM361_19680) comL 3813127..3813864 (-) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  AM361_RS19770 (AM361_19685) rluD 3813999..3814979 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AM361_RS19775 (AM361_19690) yfiH 3814976..3815707 (+) 732 WP_001520329.1 purine nucleoside phosphorylase YfiH -
  AM361_RS19780 (AM361_19695) clpC 3815837..3818410 (+) 2574 WP_024176393.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=195587 AM361_RS19765 WP_000197689.1 3813127..3813864(-) (comL) [Escherichia coli strain AR_0114]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=195587 AM361_RS19765 WP_000197689.1 3813127..3813864(-) (comL) [Escherichia coli strain AR_0114]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376