Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   S100027_RS16410 Genome accession   NZ_CP021677
Coordinates   3128227..3129228 (-) Length   333 a.a.
NCBI ID   WP_003184445.1    Uniprot ID   Q65G28
Organism   Bacillus licheniformis strain SRCM100027     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3123227..3134228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100027_RS16385 (S100027_03286) - 3124117..3124749 (+) 633 WP_003184432.1 GNAT family N-acetyltransferase -
  S100027_RS16390 (S100027_03287) - 3124771..3125415 (+) 645 WP_003184434.1 acetoin utilization AcuB family protein -
  S100027_RS16395 (S100027_03288) - 3125412..3126572 (+) 1161 WP_080626982.1 acetoin utilization protein AcuC -
  S100027_RS16400 (S100027_03289) motS 3126634..3127323 (-) 690 WP_003184438.1 flagellar motor protein MotS -
  S100027_RS16405 (S100027_03290) motP 3127313..3128131 (-) 819 WP_011198198.1 flagellar motor protein MotP -
  S100027_RS16410 (S100027_03291) ccpA 3128227..3129228 (-) 1002 WP_003184445.1 catabolite control protein A Regulator
  S100027_RS16415 (S100027_03292) - 3129544..3130620 (-) 1077 WP_003184447.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  S100027_RS16420 (S100027_03294) - 3130831..3131280 (-) 450 WP_011198199.1 hypothetical protein -
  S100027_RS16425 (S100027_03295) ytxJ 3131430..3131756 (-) 327 WP_044821735.1 bacillithiol system redox-active protein YtxJ -
  S100027_RS16430 (S100027_03296) - 3131777..3132193 (-) 417 WP_003184452.1 YtxH domain-containing protein -
  S100027_RS16435 (S100027_03297) - 3132197..3132619 (-) 423 WP_003184453.1 DUF948 domain-containing protein -
  S100027_RS16440 (S100027_03298) murC 3132786..3134084 (-) 1299 WP_003184455.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36784.27 Da        Isoelectric Point: 5.1627

>NTDB_id=194797 S100027_RS16410 WP_003184445.1 3128227..3129228(-) (ccpA) [Bacillus licheniformis strain SRCM100027]
MSNVTIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMDKELHLLNTMLGKQVDGIVFMSGNVTEEHVEEFKRSPVPIVLAASVEEKGETPSVAI
DYEQAIYDAATMLIEKGHKRLAFVSGPMAEPVNQAKKLQGFKRALGDKGLQFKEEYVVEGDYTYDSGMEALEALMKLDEK
PTAVLSATDEMALGVIHAAQDKGLAVPDDLEVIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEEVEEHIV
QLPHRIELRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=194797 S100027_RS16410 WP_003184445.1 3128227..3129228(-) (ccpA) [Bacillus licheniformis strain SRCM100027]
ATGAGTAATGTGACAATATATGATGTAGCACGCGAAGCAAATGTAAGTATGGCAACCGTTTCCCGGGTCGTCAACGGGAA
TCCGAATGTCAAGCCGACGACGAGAAAGAAGGTGCTTGAAGCGATCGAGCGTCTTGGCTATCGTCCAAACGCCGTGGCAA
GAGGGCTGGCAAGCAAAAAGACGACGACTGTCGGCGTGATCATTCCCGATATTTCCAGTATCTTTTATTCAGAGCTGGCG
AGGGGAATCGAAGATATCGCAACGATGTACAAGTACAATATTATTTTGAGCAATTCCGACCAGAATATGGACAAAGAACT
TCATCTTTTGAATACGATGCTAGGAAAGCAAGTTGACGGTATCGTCTTTATGAGCGGAAATGTGACTGAAGAGCATGTGG
AGGAATTTAAGCGATCGCCAGTTCCGATCGTGCTTGCGGCATCTGTTGAAGAAAAAGGGGAAACGCCGTCGGTTGCGATC
GATTATGAACAGGCGATTTATGATGCGGCAACCATGCTGATTGAGAAAGGCCATAAGCGCCTTGCGTTCGTCTCAGGACC
TATGGCTGAACCGGTTAATCAAGCGAAAAAACTGCAAGGCTTTAAAAGAGCGCTTGGGGATAAGGGGCTGCAATTTAAGG
AAGAGTATGTTGTAGAAGGCGATTATACGTACGATTCAGGAATGGAAGCGCTGGAGGCTTTAATGAAGCTGGATGAAAAA
CCGACAGCCGTCCTGTCAGCGACAGACGAAATGGCGCTCGGCGTTATTCACGCAGCACAGGATAAAGGACTGGCTGTTCC
GGATGACCTTGAAGTGATCGGTTTTGACAATACAAGGCTTTCATTAATGGTTCGGCCGCAGCTGTCGACTGTCGTCCAGC
CTACGTATGATATCGGTGCCGTGGCGATGAGGCTTCTGACAAAGCTGATGAACAAAGAGGAAGTCGAAGAGCATATTGTC
CAGCTGCCGCATCGCATTGAACTCAGACAATCAACAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q65G28

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.939

99.099

0.535

  ccpA Streptococcus pneumoniae D39

53.636

99.099

0.532

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

49.699

99.7

0.495


Multiple sequence alignment