Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   MTVDSCj16_RS08130 Genome accession   NZ_CP017033
Coordinates   1556266..1557678 (-) Length   470 a.a.
NCBI ID   WP_002862130.1    Uniprot ID   A0A1E7P8U9
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551266..1562678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS08105 (MTVDSCj16_1608) - 1551591..1552354 (+) 764 Protein_1580 TSUP family transporter -
  MTVDSCj16_RS08110 (MTVDSCj16_1609) ctsF 1552347..1553528 (-) 1182 WP_069360675.1 type II secretion system F family protein Machinery gene
  MTVDSCj16_RS08115 (MTVDSCj16_1610) ctsE 1553525..1555084 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MTVDSCj16_RS08120 (MTVDSCj16_1611) ctsX 1555074..1555661 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MTVDSCj16_RS08125 (MTVDSCj16_1612) ctsP 1555665..1556273 (-) 609 WP_069360676.1 ATP-binding protein Machinery gene
  MTVDSCj16_RS08130 (MTVDSCj16_1613) ctsD 1556266..1557678 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MTVDSCj16_RS08135 (MTVDSCj16_1614) ctsR 1557656..1557967 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  MTVDSCj16_RS08140 (MTVDSCj16_1615) nifJ 1557991..1561551 (-) 3561 WP_069360677.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MTVDSCj16_RS08145 (MTVDSCj16_1616) - 1561645..1562286 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53055.57 Da        Isoelectric Point: 6.6184

>NTDB_id=194720 MTVDSCj16_RS08130 WP_002862130.1 1556266..1557678(-) (ctsD) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=194720 MTVDSCj16_RS08130 WP_002862130.1 1556266..1557678(-) (ctsD) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7P8U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.574

100

0.996

Multiple sequence alignment