Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MTVDSCj16_RS08135 Genome accession   NZ_CP017033
Coordinates   1557656..1557967 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552656..1562967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS08115 (MTVDSCj16_1610) ctsE 1553525..1555084 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MTVDSCj16_RS08120 (MTVDSCj16_1611) ctsX 1555074..1555661 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MTVDSCj16_RS08125 (MTVDSCj16_1612) ctsP 1555665..1556273 (-) 609 WP_069360676.1 ATP-binding protein Machinery gene
  MTVDSCj16_RS08130 (MTVDSCj16_1613) ctsD 1556266..1557678 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MTVDSCj16_RS08135 (MTVDSCj16_1614) ctsR 1557656..1557967 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  MTVDSCj16_RS08140 (MTVDSCj16_1615) nifJ 1557991..1561551 (-) 3561 WP_069360677.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MTVDSCj16_RS08145 (MTVDSCj16_1616) - 1561645..1562286 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=194721 MTVDSCj16_RS08135 WP_002855438.1 1557656..1557967(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=194721 MTVDSCj16_RS08135 WP_002855438.1 1557656..1557967(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment