Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   MTVDSCj16_RS08110 Genome accession   NZ_CP017033
Coordinates   1552347..1553528 (-) Length   393 a.a.
NCBI ID   WP_069360675.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547347..1558528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS08080 (MTVDSCj16_1603) - 1547892..1548233 (+) 342 WP_002784057.1 hypothetical protein -
  MTVDSCj16_RS08085 (MTVDSCj16_1604) flgM 1548296..1548493 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  MTVDSCj16_RS08090 (MTVDSCj16_1605) - 1548536..1548970 (+) 435 WP_002779263.1 flagellar protein FlgN -
  MTVDSCj16_RS08095 (MTVDSCj16_1606) flgK 1548980..1550806 (+) 1827 WP_002927583.1 flagellar hook-associated protein FlgK -
  MTVDSCj16_RS08100 (MTVDSCj16_1607) - 1550823..1551587 (+) 765 WP_002851318.1 TIGR02757 family protein -
  MTVDSCj16_RS08105 (MTVDSCj16_1608) - 1551591..1552354 (+) 764 Protein_1580 TSUP family transporter -
  MTVDSCj16_RS08110 (MTVDSCj16_1609) ctsF 1552347..1553528 (-) 1182 WP_069360675.1 type II secretion system F family protein Machinery gene
  MTVDSCj16_RS08115 (MTVDSCj16_1610) ctsE 1553525..1555084 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  MTVDSCj16_RS08120 (MTVDSCj16_1611) ctsX 1555074..1555661 (-) 588 WP_002851370.1 membrane protein Machinery gene
  MTVDSCj16_RS08125 (MTVDSCj16_1612) ctsP 1555665..1556273 (-) 609 WP_069360676.1 ATP-binding protein Machinery gene
  MTVDSCj16_RS08130 (MTVDSCj16_1613) ctsD 1556266..1557678 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MTVDSCj16_RS08135 (MTVDSCj16_1614) ctsR 1557656..1557967 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45706.32 Da        Isoelectric Point: 9.2580

>NTDB_id=194716 MTVDSCj16_RS08110 WP_069360675.1 1552347..1553528(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKGLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=194716 MTVDSCj16_RS08110 WP_069360675.1 1552347..1553528(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGGTTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment