Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CC14983A_RS02120 Genome accession   NZ_CP017025
Coordinates   430038..430553 (+) Length   171 a.a.
NCBI ID   WP_002801535.1    Uniprot ID   -
Organism   Campylobacter coli strain 14983A     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425038..435553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC14983A_RS02095 (CC14983A_0409) - 425494..425832 (+) 339 WP_002777761.1 hypothetical protein -
  CC14983A_RS02100 (CC14983A_0410) - 425841..426566 (+) 726 WP_002792130.1 phosphatidate cytidylyltransferase -
  CC14983A_RS02105 (CC14983A_0411) dxr 426563..427639 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CC14983A_RS02110 (CC14983A_0412) - 427636..429030 (+) 1395 WP_002788428.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CC14983A_RS02115 (CC14983A_0413) tsaD 429027..430034 (+) 1008 WP_002788427.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CC14983A_RS02120 (CC14983A_0414) ctsG 430038..430553 (+) 516 WP_002801535.1 type II secretion system protein Machinery gene
  CC14983A_RS02125 (CC14983A_0415) - 430553..431794 (+) 1242 WP_069179480.1 DUF2920 family protein -
  CC14983A_RS02130 (CC14983A_0416) - 431804..433627 (+) 1824 WP_069179481.1 motility associated factor glycosyltransferase family protein -
  CC14983A_RS02135 (CC14983A_0417) - 433624..435441 (+) 1818 WP_069179482.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18996.99 Da        Isoelectric Point: 8.4861

>NTDB_id=194601 CC14983A_RS02120 WP_002801535.1 430038..430553(+) (ctsG) [Campylobacter coli strain 14983A]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=194601 CC14983A_RS02120 WP_002801535.1 430038..430553(+) (ctsG) [Campylobacter coli strain 14983A]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCTAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

78.363

100

0.784

Multiple sequence alignment