Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   S100141_RS07005 Genome accession   NZ_CP021669
Coordinates   1297577..1299580 (+) Length   667 a.a.
NCBI ID   WP_009328229.1    Uniprot ID   Q65J38
Organism   Bacillus licheniformis strain SRCM100141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292577..1304580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100141_RS06970 (S100141_01419) - 1292715..1293476 (+) 762 WP_003182215.1 hypothetical protein -
  S100141_RS06975 (S100141_01420) - 1293536..1294375 (+) 840 WP_003182218.1 thymidylate synthase -
  S100141_RS06980 (S100141_01421) nucA/comI 1294734..1295162 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  S100141_RS06985 (S100141_01423) dinR/lexA 1295358..1295981 (-) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  S100141_RS06990 (S100141_01424) yneA 1296134..1296445 (+) 312 WP_003182225.1 cell division suppressor protein YneA -
  S100141_RS06995 (S100141_01425) - 1296464..1297111 (+) 648 WP_003182227.1 recombinase family protein -
  S100141_RS07000 (S100141_01426) - 1297177..1297410 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  S100141_RS07005 (S100141_01427) recP/tkt 1297577..1299580 (+) 2004 WP_009328229.1 transketolase Machinery gene
  S100141_RS07010 (S100141_01428) sirA 1299735..1300172 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  S100141_RS07015 (S100141_01429) - 1300257..1300475 (+) 219 WP_003182236.1 YneF family protein -
  S100141_RS07020 (S100141_01430) - 1300556..1300717 (-) 162 WP_202604361.1 aspartyl-phosphate phosphatase Spo0E family protein -
  S100141_RS07025 (S100141_01431) - 1300960..1301667 (+) 708 WP_011198008.1 cytochrome c biogenesis protein CcdA -
  S100141_RS07030 (S100141_01432) spo0A 1301749..1302120 (+) 372 WP_009328223.1 response regulator Regulator
  S100141_RS07035 (S100141_01433) - 1302194..1302688 (+) 495 WP_085959522.1 CcdC family protein -
  S100141_RS07040 (S100141_01434) - 1302724..1303152 (-) 429 WP_003182245.1 DUF2621 domain-containing protein -
  S100141_RS07045 (S100141_01435) - 1303357..1303764 (-) 408 WP_003182248.1 Hsp20/alpha crystallin family protein -
  S100141_RS26525 - 1303900..1303971 (-) 72 WP_415873373.1 small acid-soluble spore protein P -
  S100141_RS26530 - 1303972..1304018 (-) 47 Protein_1387 hypothetical protein -
  S100141_RS07055 sspO 1304087..1304233 (-) 147 WP_003182252.1 small acid-soluble spore protein O -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72636.78 Da        Isoelectric Point: 4.8350

>NTDB_id=194600 S100141_RS07005 WP_009328229.1 1297577..1299580(+) (recP/tkt) [Bacillus licheniformis strain SRCM100141]
MKTIELKSVATIRTLSIDAIEKAKSGHPGMPMGTAPMAYALWTKMMNVSPENPNWFNRDRFVLSAGHGSMLLYSMLHLSG
YDVSIEDLKNFRQWGSKTPGHPEFGHTPGVDATTGPLGQGIGMAVGMALAERHLAETYNRDDYRVVDHYTYSICGDGDLM
EGISSEAASLAGHLNLGRLIVLYDSNDISLDGELNRSFSENVKQRFEAMNWEVLYVEDGNNIAEITAAIEKAKQNEKQPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGSEEAKLTKEAYEWTYEEDFYVPSEVYEHFNETVKEAGKKKEAEWNELFSAYKK
AHPELAEELELAIKGELPEGWDQKVPVYEKGSSLASRASSGEVLNGIAQQVPFFFGGSADLAGSNKTTIKNGGDVSAKDY
AGRNIWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPIEQLA
SLRALPNLSVIRPADGNETAAAWKLALQSKDQPTALVLTRQNLPTIDQSAETAYEGVKKGAYVVSKSQNEKPEAILLASG
SEVGLALDAQSELQKEGIDVSVVSVPSWDRFDKQPAEYKNAVLPTDVTKRLAIEMGSPLGWERYTGTDGDILGIDQFGAS
APGETIMKEYGFTPANVVDRVKKLLNR

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=194600 S100141_RS07005 WP_009328229.1 1297577..1299580(+) (recP/tkt) [Bacillus licheniformis strain SRCM100141]
ATGAAAACGATTGAATTAAAATCTGTCGCAACAATACGAACACTCTCCATAGACGCGATTGAAAAAGCTAAATCCGGTCA
CCCCGGCATGCCGATGGGGACTGCTCCGATGGCTTATGCGCTTTGGACAAAAATGATGAATGTCAGCCCTGAAAATCCGA
ATTGGTTTAACAGGGACCGTTTTGTGCTTTCCGCCGGACACGGATCAATGCTTTTGTACAGCATGCTTCACTTAAGCGGA
TATGACGTTTCAATTGAAGACCTCAAAAATTTCCGCCAATGGGGAAGCAAAACTCCTGGGCATCCGGAATTCGGACATAC
TCCGGGTGTAGATGCGACTACAGGTCCGCTTGGCCAAGGAATCGGAATGGCTGTCGGAATGGCGCTTGCTGAACGTCACC
TTGCTGAAACTTACAACCGTGACGACTATCGCGTCGTTGACCATTATACATACAGCATTTGCGGTGACGGAGACTTGATG
GAGGGAATTTCATCCGAAGCGGCTTCGCTTGCGGGACATTTGAACCTCGGCCGTCTCATCGTGCTTTATGATTCAAATGA
CATTTCGCTTGACGGCGAACTAAACCGCTCATTCTCTGAAAATGTAAAGCAGCGCTTTGAAGCGATGAATTGGGAAGTGC
TTTATGTTGAAGACGGCAACAACATTGCCGAAATTACGGCGGCCATCGAGAAAGCGAAACAAAATGAAAAGCAGCCGACA
TTAATTGAAGTGAAAACAACGATCGGTTTCGGTTCTCCAAACCGTGCGGGCACATCCGGCGTCCACGGCGCTCCGCTCGG
ATCAGAAGAGGCGAAATTAACGAAGGAAGCGTATGAGTGGACATACGAAGAAGATTTTTATGTTCCTTCCGAAGTGTACG
AGCACTTTAACGAAACAGTGAAGGAAGCGGGCAAGAAAAAAGAGGCGGAATGGAACGAACTGTTCTCCGCATACAAGAAA
GCCCACCCGGAACTTGCCGAAGAGCTTGAACTGGCGATCAAAGGCGAGCTTCCTGAAGGATGGGATCAGAAAGTACCTGT
ATATGAAAAAGGAAGCAGCCTTGCTTCACGTGCATCCTCAGGTGAAGTGTTAAACGGAATCGCTCAACAAGTGCCGTTTT
TCTTTGGCGGATCCGCGGACTTGGCCGGTTCCAACAAAACGACAATCAAAAACGGCGGAGATGTTTCAGCGAAGGATTAC
GCCGGCAGAAATATCTGGTTCGGTGTAAGGGAATTTGCGATGGGAGCAGCTTTGAACGGAATGGCTCTTCACGGAGGCCT
CCGCGTATTCGGCGGAACGTTCTTCGTTTTCTCCGATTACTTGAGACCAGCGATTCGTCTTGCTGCATTGATGGGGCTTC
CTGTCACCTATGTATTTACACATGACAGCATTGCCGTCGGTGAAGACGGACCGACTCATGAGCCGATTGAACAGCTGGCA
TCACTTCGTGCGCTGCCGAACTTGTCCGTCATCAGACCTGCCGACGGAAATGAAACAGCAGCTGCCTGGAAGCTCGCGCT
TCAATCAAAAGACCAGCCGACTGCGCTTGTGTTGACACGCCAAAACTTGCCGACAATCGATCAGTCTGCTGAAACGGCTT
ATGAAGGCGTTAAAAAGGGTGCATATGTCGTTTCAAAAAGCCAAAACGAAAAACCGGAAGCGATCTTGCTTGCGAGCGGA
TCTGAAGTTGGCCTTGCGCTTGATGCACAAAGCGAGCTGCAAAAAGAAGGCATTGACGTATCCGTTGTCAGCGTTCCGTC
ATGGGATCGATTTGACAAGCAGCCGGCTGAATATAAAAACGCTGTTCTTCCAACTGATGTGACAAAGCGTCTCGCAATTG
AAATGGGATCGCCGCTCGGATGGGAGAGATATACAGGCACTGACGGGGACATTCTCGGAATCGACCAGTTCGGTGCATCA
GCTCCTGGCGAAACGATCATGAAAGAATACGGTTTTACGCCTGCGAATGTAGTTGACCGGGTGAAAAAACTGTTAAATCG
CTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65J38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.768

99.4

0.574

Multiple sequence alignment