Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CC14983A_RS01780 Genome accession   NZ_CP017025
Coordinates   359534..360718 (+) Length   394 a.a.
NCBI ID   WP_069179479.1    Uniprot ID   -
Organism   Campylobacter coli strain 14983A     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 354534..365718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC14983A_RS10990 (CC14983A_0344) - 355639..357474 (+) 1836 WP_079853057.1 hypothetical protein -
  CC14983A_RS01775 (CC14983A_0345) - 357510..359537 (+) 2028 WP_069179478.1 capsular polysaccharide biosynthesis protein -
  CC14983A_RS01780 (CC14983A_0346) kpsS 359534..360718 (+) 1185 WP_069179479.1 capsule biosynthesis protein Regulator
  CC14983A_RS01785 (CC14983A_0347) - 360784..361905 (+) 1122 WP_057044883.1 hypothetical protein -
  CC14983A_RS01790 (CC14983A_0348) - 361902..363272 (+) 1371 WP_002783822.1 cytochrome P450 -
  CC14983A_RS01795 (CC14983A_0349) - 363269..363691 (+) 423 WP_052775871.1 hypothetical protein -
  CC14983A_RS01800 (CC14983A_0350) acpS 363694..364041 (-) 348 WP_002779165.1 holo-ACP synthase -
  CC14983A_RS01805 (CC14983A_0351) fliL 364041..364577 (-) 537 WP_052775872.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46634.41 Da        Isoelectric Point: 10.0045

>NTDB_id=194598 CC14983A_RS01780 WP_069179479.1 359534..360718(+) (kpsS) [Campylobacter coli strain 14983A]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPSLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=194598 CC14983A_RS01780 WP_069179479.1 359534..360718(+) (kpsS) [Campylobacter coli strain 14983A]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAGAACTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGACAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCCACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTTTAAATTTCAAAA
ATTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.071

100

0.881

Multiple sequence alignment