Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BGK55_RS05700 Genome accession   NZ_CP017020
Coordinates   1266544..1267998 (-) Length   484 a.a.
NCBI ID   WP_033481907.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain MSCT     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261544..1272998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGK55_RS05680 (BGK55_05675) - 1262331..1263359 (+) 1029 WP_234787234.1 glycosyltransferase -
  BGK55_RS05685 (BGK55_05680) - 1263352..1264008 (+) 657 WP_157733690.1 methionine biosynthesis protein MetW -
  BGK55_RS05690 (BGK55_05685) pilB 1264106..1265842 (+) 1737 WP_005915821.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BGK55_RS05695 (BGK55_05690) pilB 1265939..1266058 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  BGK55_RS22440 - 1266214..1266357 (+) 144 WP_005915817.1 hypothetical protein -
  BGK55_RS05700 (BGK55_05695) pilR 1266544..1267998 (-) 1455 WP_033481907.1 sigma-54 dependent transcriptional regulator Regulator
  BGK55_RS05705 (BGK55_05700) - 1268263..1269876 (-) 1614 WP_005915814.1 HAMP domain-containing sensor histidine kinase -
  BGK55_RS05710 (BGK55_05705) sucC 1270108..1271277 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  BGK55_RS05715 (BGK55_05710) sucD 1271302..1272177 (+) 876 WP_005915809.1 succinate--CoA ligase subunit alpha -
  BGK55_RS05725 (BGK55_05720) - 1272593..1272964 (+) 372 WP_005915804.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52540.42 Da        Isoelectric Point: 7.0128

>NTDB_id=194550 BGK55_RS05700 WP_033481907.1 1266544..1267998(-) (pilR) [Xanthomonas citri pv. malvacearum strain MSCT]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=194550 BGK55_RS05700 WP_033481907.1 1266544..1267998(-) (pilR) [Xanthomonas citri pv. malvacearum strain MSCT]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATTAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

95.041

0.599
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment