Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   B4U42_RS12155 Genome accession   NZ_CP021644
Coordinates   2341061..2343142 (-) Length   693 a.a.
NCBI ID   WP_005711117.1    Uniprot ID   -
Organism   Glaesserella parasuis 29755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2336061..2348142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U42_RS12125 (B4U42_11980) - 2337692..2338450 (-) 759 WP_005711128.1 DeoR family transcriptional regulator -
  B4U42_RS12130 (B4U42_11985) - 2338586..2338909 (-) 324 WP_005711127.1 AzlD domain-containing protein -
  B4U42_RS12135 (B4U42_11990) - 2338909..2339601 (-) 693 WP_005711126.1 AzlC family ABC transporter permease -
  B4U42_RS12140 (B4U42_11995) - 2339687..2339773 (-) 87 WP_071610592.1 lipoprotein -
  B4U42_RS12145 (B4U42_12000) - 2340037..2340294 (-) 258 WP_005711125.1 hypothetical protein -
  B4U42_RS12150 (B4U42_12005) - 2340379..2340777 (-) 399 WP_005711124.1 NirD/YgiW/YdeI family stress tolerance protein -
  B4U42_RS12155 (B4U42_12010) recG 2341061..2343142 (-) 2082 WP_005711117.1 ATP-dependent DNA helicase RecG Machinery gene
  B4U42_RS12160 (B4U42_12015) - 2343255..2344460 (-) 1206 WP_005711115.1 cupin domain-containing protein -
  B4U42_RS12165 (B4U42_12020) - 2344536..2345324 (-) 789 WP_005711113.1 BPL-N domain-containing protein -
  B4U42_RS12170 (B4U42_12025) - 2345408..2345974 (+) 567 WP_005711111.1 biotin transporter BioY -
  B4U42_RS12175 (B4U42_12030) - 2346105..2346914 (-) 810 WP_005711109.1 Cof-type HAD-IIB family hydrolase -
  B4U42_RS12180 (B4U42_12035) - 2347038..2347715 (+) 678 WP_020997168.1 phosphoribosyltransferase family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77307.47 Da        Isoelectric Point: 8.4430

>NTDB_id=194544 B4U42_RS12155 WP_005711117.1 2341061..2343142(-) (recG) [Glaesserella parasuis 29755]
MNQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPLRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEFKAADIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISTKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQSYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=194544 B4U42_RS12155 WP_005711117.1 2341061..2343142(-) (recG) [Glaesserella parasuis 29755]
ATGAACCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAACGTGCAAGATCTGCTATTCCATTTGCCGCTACGGTATGAAGACCGTACTCGGATCACGCCGATTG
CCGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTACAATTCGGTCGTCGCCCGATT
TTAAGTACCACGATTTCTGACGGCACGAGCAAAATTACTCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCGACTGGCGTAAGGGTCAAAGCCTTTGGTGAGATTAAACGTGGTCGCTTTATGGCAGAAATGCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTAGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCCGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTACAGTTGTTGCATCGACCGCCGCCGAGTGTGTCGTCCGAATTATTAG
ATAAAGGCGAACACCCTGCACAAAAACGGCTGATTTTTGAAGAGTTGTTGGCACATAATTTGGCAATGCAACAGGTGCGA
ATGGGCGTGCAACAACACTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTGGCGACTTTGCCGTT
TCAGCCGACTAACGCCCAAAGTCGTGTAACCGCAGAGATTGAACAGGATTTGGCGAAACCTTTCCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCAGCATTGGCGGCACTGCTGGCGATTGACAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCCCATAATTTTGCCAACTGGCTGCGACCTTTTGGGATTGA
GGTAGGCTGGTTAGCCGGCAAGGTGAAAGGTAAAGCGAGAACGGCACAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCTTACGCGAGAAAGGGGCGAAGGGCGATGTGTATCCGCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTAGCGATGACTGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCAG
GGCGAACGCCGATTACGACGGTGGCGATTTCAGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTATTGGAAGCACAAGCGGCAGCGGCGAT
TGCCGAAGATTTGCAACGAGCCTTGCCAGATTTGCGGATTGGCTTGGTTCACGGGCGAATGAAACCGCAAGAAAAACAGG
CGATTATGGCGGAATTTAAGGCGGCAGATATTGATTTGTTAGTCGCAACAACAGTGATTGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGGCTGGCACAGTTGCACCAACTGCGTGGGCGTGTCGGGCG
TGGGGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCAACTAAGCGTTTACAGGTGCTGA
GAGATAGCCAAGATGGCTTTGTGATTGCTGAAAAAGATTTGGAAATTCGAGGACCAGGCGAAGTGCTAGGCACAAAACAG
ACGGGAATGGCAGAGTTCAAGATTGCAAATTTAATGCGAGATCGTAAGATGATCCCGTTGGTGCAGAGCTACGCTAAACA
GCTAACGTTAAAATATCCCGATACAGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-407)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)

RecG wedge domain (RecG_wedge)

(16-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

39.794

98.268

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.482

94.661

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.482

94.661

0.374

Multiple sequence alignment