Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PsaNZ47_RS21385 Genome accession   NZ_CP017009
Coordinates   4444962..4445639 (-) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. actinidiae strain NZ-47     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4439962..4450639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PsaNZ47_RS21360 (PsaNZ47_19850) murB 4441521..4442540 (-) 1020 WP_003381110.1 UDP-N-acetylmuramate dehydrogenase -
  PsaNZ47_RS21365 (PsaNZ47_19855) kdsB 4442575..4443339 (-) 765 WP_003381111.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PsaNZ47_RS21370 (PsaNZ47_19860) - 4443336..4443521 (-) 186 WP_003381112.1 Trm112 family protein -
  PsaNZ47_RS21375 (PsaNZ47_19865) lpxK 4443539..4444534 (-) 996 WP_003381114.1 tetraacyldisaccharide 4'-kinase -
  PsaNZ47_RS21380 (PsaNZ47_19870) - 4444534..4444965 (-) 432 WP_003381117.1 ExbD/TolR family protein -
  PsaNZ47_RS21385 (PsaNZ47_19875) exbB 4444962..4445639 (-) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PsaNZ47_RS21390 (PsaNZ47_19880) comA 4445722..4447938 (-) 2217 WP_017683999.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PsaNZ47_RS21395 (PsaNZ47_19885) tssI 4448176..4450203 (+) 2028 WP_017684000.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=194445 PsaNZ47_RS21385 WP_003381119.1 4444962..4445639(-) (exbB) [Pseudomonas syringae pv. actinidiae strain NZ-47]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=194445 PsaNZ47_RS21385 WP_003381119.1 4444962..4445639(-) (exbB) [Pseudomonas syringae pv. actinidiae strain NZ-47]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCATGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGACTCGCCGCTGGGCGAAATCCTCGCCGCTGGCCTGGCCAAT
TCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAACGCTACCT
GAGCGCGCTGGGCTCTATCGCAGCAATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACTGCG
TCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAGGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCA
AATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment