Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   BFM96_RS07345 Genome accession   NZ_CP016953
Coordinates   1575596..1576828 (+) Length   410 a.a.
NCBI ID   WP_068992396.1    Uniprot ID   A0A917EFE2
Organism   Streptococcus himalayensis strain HTS2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1570596..1581828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS07325 - 1570618..1573161 (+) 2544 WP_068992386.1 M1 family metallopeptidase -
  BFM96_RS07330 - 1573376..1574215 (+) 840 WP_068992388.1 thymidylate synthase -
  BFM96_RS07335 - 1574234..1574788 (+) 555 WP_068992391.1 hypothetical protein -
  BFM96_RS07340 - 1574874..1575386 (+) 513 WP_068992394.1 dihydrofolate reductase -
  BFM96_RS11110 - 1575386..1575556 (+) 171 WP_145939721.1 hypothetical protein -
  BFM96_RS07345 clpX 1575596..1576828 (+) 1233 WP_068992396.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  BFM96_RS07350 yihA 1576838..1577425 (+) 588 WP_068992401.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  BFM96_RS07355 - 1577490..1578773 (+) 1284 WP_068994248.1 DUF2130 domain-containing protein -
  BFM96_RS07360 truB 1578773..1579651 (+) 879 WP_068994250.1 tRNA pseudouridine(55) synthase TruB -
  BFM96_RS07365 - 1579674..1580594 (+) 921 WP_068992403.1 bifunctional riboflavin kinase/FAD synthetase -
  BFM96_RS07370 - 1580702..1581103 (+) 402 WP_068992406.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BFM96_RS07375 - 1581109..1581387 (+) 279 WP_068992409.1 UPF0223 family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45574.23 Da        Isoelectric Point: 4.5317

>NTDB_id=194050 BFM96_RS07345 WP_068992396.1 1575596..1576828(+) (clpX) [Streptococcus himalayensis strain HTS2]
MPTNRKQEMMVYCSFCGKSQEEVPKIIAGNNAFICNECVELAQEIIREELAEEVLADLSVVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNRDSEEEVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNRAIAENGSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVEDLVR
ILSEPRNALVKQYQALLSFDDVQLEFDDEALREIAQKALEQKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVE
GKSKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=194050 BFM96_RS07345 WP_068992396.1 1575596..1576828(+) (clpX) [Streptococcus himalayensis strain HTS2]
ATGCCTACAAATAGGAAACAAGAGATGATGGTTTATTGCTCATTTTGTGGAAAAAGTCAGGAAGAAGTTCCCAAAATTAT
TGCAGGAAATAATGCCTTTATCTGTAACGAATGTGTCGAGTTAGCTCAGGAAATTATCCGTGAAGAATTGGCAGAAGAAG
TCTTGGCAGACTTGTCTGTGGTGCCAAAACCACAAGAATTGCTCAATATTTTGAACCATTATGTTATCGGGCAAGACCGT
GCGAAACGTGCCTTGGCAGTAGCGGTTTATAACCATTACAAACGGATCAATTTCCATGATAATCGTGACAGCGAAGAGGA
AGTGGATTTGCAAAAGTCAAACATTCTTATGATTGGCCCGACTGGTTCAGGAAAGACATTTCTAGCGCAAACCTTGGCTA
AGAGTTTGAATGTTCCTTTCGCTATTGCGGACGCAACAGCCTTGACAGAAGCTGGTTATGTGGGGGAAGATGTTGAAAAT
ATCCTCTTGAAACTTTTGCAAGCAGCAGATTTCAATATTGAGCGTGCCGAGCGTGGCATCATCTATGTTGATGAAATTGA
TAAAATCGCAAAGAAAAGTGAAAATGTTTCTATCACCCGAGATGTCTCTGGTGAGGGTGTCCAACAAGCCCTTCTCAAAA
TCATTGAAGGGACAGTGGCGAGCGTTCCACCACAGGGTGGACGTAAGCATCCGCAGCAAGAAATGATTCAGGTGGATACG
AAGAATATTCTCTTTATTGTCGGCGGTGCTTTCGACGGCATTGAAGAAATCGTGAAACAGCGTCTGGGCGAAAAAGTTAT
TGGATTTGGTCAGAATAATCGAGCAATCGCTGAAAATGGCTCTTATATGCAGGAAATCATTGCCGAAGATATTCAAAAAT
TCGGTATTATTCCTGAGTTAATCGGTCGATTGCCTGTCTTTGCTGCCCTAGAGCAGTTGACGGTAGAGGATTTGGTTCGA
ATTTTAAGTGAGCCGAGAAATGCCTTAGTTAAACAATACCAAGCCCTCTTGTCCTTTGATGATGTTCAATTGGAATTTGA
TGACGAGGCTCTTCGGGAAATTGCTCAAAAAGCCTTGGAGCAAAAAACAGGAGCACGTGGCCTTCGTTCCATTATCGAGG
AAACCATGTTAGATGTTATGTTTGAAGTTCCAAGTCAAGAAAATGTCAAGCTGGTTCGCATTACCAAGGAAGCTGTAGAA
GGCAAGAGCAAGCCAATTTTGGAAACGGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.902

100

0.839
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.882

99.024

0.573

Multiple sequence alignment