Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BFM96_RS05845 Genome accession   NZ_CP016953
Coordinates   1241048..1242004 (+) Length   318 a.a.
NCBI ID   WP_068991552.1    Uniprot ID   A0A917A3Z4
Organism   Streptococcus himalayensis strain HTS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1236048..1247004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS05820 - 1236381..1236695 (+) 315 WP_068991539.1 PTS cellobiose transporter subunit IIB -
  BFM96_RS05825 - 1236751..1238739 (+) 1989 WP_068991542.1 transcription antiterminator -
  BFM96_RS05830 - 1238736..1239056 (+) 321 WP_068991545.1 PTS cellobiose transporter subunit IIA -
  BFM96_RS05835 - 1239071..1239577 (+) 507 WP_068991547.1 hypothetical protein -
  BFM96_RS05840 celB 1239624..1240970 (+) 1347 WP_068991550.1 PTS cellobiose transporter subunit IIC -
  BFM96_RS05845 coiA 1241048..1242004 (+) 957 WP_068991552.1 competence protein CoiA Machinery gene
  BFM96_RS05850 pepF 1242023..1243825 (+) 1803 WP_068991554.1 oligoendopeptidase F Regulator
  BFM96_RS05855 - 1243827..1244516 (+) 690 WP_068991558.1 O-methyltransferase -
  BFM96_RS05860 prsA 1244596..1245552 (+) 957 WP_068991560.1 peptidylprolyl isomerase PrsA -
  BFM96_RS05865 - 1245795..1246289 (+) 495 WP_068991564.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37955.62 Da        Isoelectric Point: 7.3196

>NTDB_id=194043 BFM96_RS05845 WP_068991552.1 1241048..1242004(+) (coiA) [Streptococcus himalayensis strain HTS2]
MLVARDTQGKFVNSLEEEYLVGEFFCPFCEGAVRVKRGSILRPHFAHISLRTCEGYTENESEEHLNLKASLYRWGVKMHS
MQVEAFVPSIQQMADLLMDDKIALEVQCSSLSLKRLKERTENYRKIGCQVLWLLGKKLWLKRSLTALQKNFLYFSQNMGF
YLWELDQEKEVLRLNYLIHEDLHGNVQYKTKEFPFERGDLLAVFRLPYQAQEVTSFLAKEDLDICRYVREQLYYQQPKWM
QLQAEYYQKGQNLLTMSREDFYPQVRPVRAESFVQISQSLESYYSNFQQYYQQESRKNLQILYPPAFYQMILAENMIK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=194043 BFM96_RS05845 WP_068991552.1 1241048..1242004(+) (coiA) [Streptococcus himalayensis strain HTS2]
ATGTTAGTTGCTCGTGATACACAAGGAAAGTTCGTCAATAGTTTGGAAGAGGAGTATTTGGTCGGAGAGTTTTTCTGTCC
ATTTTGTGAGGGAGCTGTGCGGGTGAAACGAGGGAGCATTTTGCGGCCTCATTTTGCACATATTTCTTTGCGTACTTGTG
AGGGGTATACGGAAAATGAAAGTGAGGAGCACTTAAATCTCAAGGCCAGTCTGTATCGTTGGGGTGTAAAAATGCATTCT
ATGCAAGTCGAGGCATTTGTACCGAGCATTCAGCAAATGGCAGACCTCTTAATGGATGATAAGATTGCTCTTGAAGTCCA
GTGTAGTTCGCTCAGCTTAAAACGTTTAAAGGAAAGGACAGAAAACTATCGGAAAATAGGCTGTCAAGTCCTCTGGCTGC
TGGGAAAGAAATTGTGGTTGAAACGTTCGTTGACAGCCTTACAGAAGAATTTCCTCTATTTCAGCCAAAATATGGGCTTT
TATCTGTGGGAATTGGACCAAGAAAAGGAAGTTTTGCGGCTCAATTATCTAATTCATGAAGATTTGCATGGAAATGTGCA
GTATAAAACCAAGGAATTTCCCTTTGAGCGAGGTGATTTGCTAGCTGTCTTTCGTCTGCCCTATCAAGCTCAGGAAGTGA
CTAGTTTTTTGGCCAAGGAGGATCTGGACATTTGCCGCTACGTACGTGAGCAACTTTACTACCAGCAGCCTAAATGGATG
CAGTTGCAGGCTGAATATTACCAAAAAGGGCAAAATCTACTCACCATGTCAAGAGAAGATTTCTACCCGCAAGTGAGACC
GGTTCGTGCAGAGTCCTTTGTCCAGATTTCTCAAAGTCTTGAGAGCTATTACTCTAATTTTCAGCAATATTACCAACAAG
AGTCGAGAAAAAATCTCCAAATTCTATATCCACCAGCCTTTTATCAGATGATTTTGGCAGAAAATATGATAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(2-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.145

100

0.531
  coiA Streptococcus pneumoniae TIGR4

52.516

100

0.525
  coiA Streptococcus pneumoniae Rx1

52.201

100

0.522
  coiA Streptococcus pneumoniae D39

52.201

100

0.522
  coiA Streptococcus pneumoniae R6

52.201

100

0.522
  coiA Lactococcus lactis subsp. cremoris KW2

45.538

100

0.465

Multiple sequence alignment