Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BFM96_RS05850 Genome accession   NZ_CP016953
Coordinates   1242023..1243825 (+) Length   600 a.a.
NCBI ID   WP_068991554.1    Uniprot ID   A0A917A403
Organism   Streptococcus himalayensis strain HTS2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237023..1248825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS05830 - 1238736..1239056 (+) 321 WP_068991545.1 PTS cellobiose transporter subunit IIA -
  BFM96_RS05835 - 1239071..1239577 (+) 507 WP_068991547.1 hypothetical protein -
  BFM96_RS05840 celB 1239624..1240970 (+) 1347 WP_068991550.1 PTS cellobiose transporter subunit IIC -
  BFM96_RS05845 coiA 1241048..1242004 (+) 957 WP_068991552.1 competence protein CoiA Machinery gene
  BFM96_RS05850 pepF 1242023..1243825 (+) 1803 WP_068991554.1 oligoendopeptidase F Regulator
  BFM96_RS05855 - 1243827..1244516 (+) 690 WP_068991558.1 O-methyltransferase -
  BFM96_RS05860 prsA 1244596..1245552 (+) 957 WP_068991560.1 peptidylprolyl isomerase PrsA -
  BFM96_RS05865 - 1245795..1246289 (+) 495 WP_068991564.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69448.31 Da        Isoelectric Point: 4.5951

>NTDB_id=194044 BFM96_RS05850 WP_068991554.1 1242023..1243825(+) (pepF) [Streptococcus himalayensis strain HTS2]
MVKQRNEIEEKYTWDLTTVFPSDESWEAELASLSTDVAKAKAFEGHLLDSANSLLETTDTYMSLSRRLEKLYVYASMKND
QDTREASYQEYQAKASSLYSDFGQTFAFFEPEFMKITEEMYQNFLQEAEGLALYRHYFDRLLKAKEHVLSQREEELLAGA
SEIFGAASETFAILDNADLVFPVVRDEDGDEVQLSHGNYITLVESKDRQVRKGAYEAMYSVYEQYQHTYAKTLQTNVKVQ
NYRAKVRHYKSAREAALSQNFIPETVYDSLVSAVHKHLPLLHRYMALRAKILGLSDLKMYDVYTPLSEVDYKFSYEEALK
KSEEVLAIFGEDYLAKVQQAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVTDDRTRFAILNHFLDGFKGTVYRQTQFAEFEHAIHQADQAGEVLTSEY
LNTLYADLNETYYGLKKEDNPEIQYEWARIPHFYYNYYVFQYATGFSAASALAEKIVHGNPEDKENYLNYLKAGNSDYPL
EVIKKAGVDMEQEDYLHAAFAVFERRLNEFEALVEKLGLI

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=194044 BFM96_RS05850 WP_068991554.1 1242023..1243825(+) (pepF) [Streptococcus himalayensis strain HTS2]
ATGGTAAAACAAAGAAATGAAATCGAAGAAAAATATACTTGGGATTTGACGACAGTCTTTCCAAGTGATGAGTCTTGGGA
GGCTGAGCTAGCCAGTTTGTCTACGGACGTAGCAAAAGCCAAGGCCTTTGAAGGTCATCTGCTTGACTCGGCAAACAGCT
TGCTTGAAACGACGGATACTTACATGTCCTTATCCCGTCGATTAGAGAAGCTCTATGTGTATGCGTCCATGAAAAACGAC
CAAGATACGCGTGAGGCTAGCTACCAAGAGTATCAAGCCAAGGCAAGTAGTCTTTACAGTGACTTTGGTCAAACCTTTGC
CTTTTTCGAGCCAGAATTTATGAAGATTACAGAGGAAATGTACCAAAACTTCTTGCAGGAAGCAGAGGGACTAGCTCTTT
ACCGTCATTATTTTGACCGTTTGCTGAAGGCAAAAGAGCATGTTTTGTCTCAGCGTGAGGAAGAGTTGCTTGCAGGGGCT
AGCGAGATTTTTGGAGCAGCGAGTGAAACTTTTGCTATCTTGGACAATGCAGACCTTGTATTTCCAGTGGTTCGTGATGA
GGATGGCGATGAGGTTCAACTATCTCATGGAAACTACATTACTTTAGTAGAATCAAAAGATCGCCAAGTGAGAAAGGGTG
CTTATGAAGCCATGTATAGCGTCTATGAGCAGTACCAGCACACCTATGCGAAAACTCTACAAACCAATGTAAAAGTTCAA
AATTATCGGGCTAAGGTTCGCCATTATAAGAGTGCGCGTGAGGCGGCTTTGTCACAGAATTTCATTCCAGAAACGGTCTA
TGATAGCTTGGTTTCTGCTGTTCATAAGCACTTGCCGCTGTTACATCGTTACATGGCTCTGCGTGCTAAGATTTTGGGCT
TGTCGGATTTGAAGATGTATGATGTCTACACACCGCTCTCAGAAGTCGATTACAAGTTTAGCTATGAAGAAGCCTTGAAA
AAATCCGAAGAGGTTTTGGCGATTTTTGGGGAGGATTATCTGGCAAAAGTTCAACAAGCTTTCTCAGAGCGTTGGATTGA
TGTTCATGAAAACCAAGGGAAACGCTCTGGAGCTTACTCAGGCGGTTCTTACGATACCAATGCCTTTATGCTGCTCAATT
GGCAAGATACGCTTGATAATCTCTATACCCTAGTCCATGAAACAGGTCATAGCATGCACTCAAGCTATACGCGGGAAACA
CAGCCTTATGTGTATGGAGATTATTCGATCTTTTTGGCTGAAATTGCCTCTACAACCAACGAAAATATCCTGACTGAAAA
ACTGCTAGAAGAAGTGACAGATGATCGGACGCGTTTTGCGATTTTGAATCATTTCTTGGATGGTTTTAAAGGAACGGTCT
ATCGTCAAACTCAATTTGCCGAGTTTGAACATGCGATTCACCAAGCCGATCAAGCTGGAGAAGTCTTGACCAGTGAGTAT
CTCAATACTCTCTATGCAGACTTAAATGAAACCTATTACGGTCTTAAAAAAGAAGACAATCCAGAAATTCAGTATGAATG
GGCAAGAATTCCACATTTCTACTATAACTATTATGTCTTCCAATATGCAACTGGCTTTTCAGCAGCGTCAGCCTTGGCAG
AAAAGATTGTCCACGGAAATCCAGAGGACAAGGAGAATTACCTCAACTATCTGAAGGCGGGAAATTCTGATTATCCATTA
GAAGTGATTAAAAAAGCAGGAGTGGATATGGAACAAGAAGACTATCTCCACGCAGCTTTTGCGGTCTTCGAACGCCGTCT
CAATGAATTTGAAGCCTTGGTAGAAAAGTTGGGTCTTATCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.141

99.333

0.707

Multiple sequence alignment