Detailed information NTG0193962

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A9P79_RS25640
• Genome accession: NZ_CP016950
• Coordinates: 2951314..2952225 (+)
• Length: 303 a.a.
• NCBI ID: WP_115704873.1
• Uniprot ID: -
• Organism: Cupriavidus taiwanensis strain SWF66294
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2946314..2957225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9P79_RS25620 (A9P79_25250)	-	2947321..2947641 (-)	321	WP_240072664.1	helix-turn-helix domain-containing protein	-
A9P79_RS25625 (A9P79_25255)	-	2947654..2947929 (-)	276	WP_240072665.1	type II toxin-antitoxin system RelE/ParE family toxin	-
A9P79_RS25630 (A9P79_25260)	pilF	2948249..2949973 (+)	1725	WP_240072666.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A9P79_RS25635 (A9P79_25265)	-	2950039..2951310 (+)	1272	WP_240072667.1	type II secretion system F family protein	-
A9P79_RS25640 (A9P79_25270)	pilD	2951314..2952225 (+)	912	WP_115704873.1	prepilin peptidase	Machinery gene
A9P79_RS25645 (A9P79_25275)	coaE	2952310..2952936 (+)	627	WP_115704875.1	dephospho-CoA kinase	-
A9P79_RS25650 (A9P79_25280)	zapD	2953146..2953904 (+)	759	WP_115681185.1	cell division protein ZapD	-
A9P79_RS25655 (A9P79_25285)	-	2953922..2954110 (+)	189	WP_111519102.1	DNA gyrase inhibitor YacG	-
A9P79_RS25660 (A9P79_25290)	-	2954136..2956175 (-)	2040	WP_240072668.1	OPT family oligopeptide transporter	-
A9P79_RS25665 (A9P79_25295)	-	2956267..2956713 (-)	447	WP_240072669.1	NUDIX domain-containing protein	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 32413.67 Da
• Isoelectric Point: 8.3375

>NTDB_id=193962 A9P79_RS25640 WP_115704873.1 2951314..2952225(+) (pilD) [Cupriavidus taiwanensis strain SWF66294]
MQPVWSATPYPTGAATGTAPLLHALAALPPVFLVAAAGLLGLVVGSFLNVVIHRVPRMMERDEANYIAELRGDPLPYPCR
YNLMVPRSACPHCGHAIAPWENVPVLSYLFLRGRCSACKAPISVRYPLVELASGVLSALVAWRFGPGAQALAALVLVWGL
VALTMIDADTQLLPDQITLPLLWIGLLLNLAGLFVALPDAVIGAAAGYLVLWLAYWLFRLLRGKEGMGFGDFKLMAALGA
WFGWQALPALVLLSSVAGVLFGLANIALRRQDRDTPFPFGPFIALAGVVVLLFGPGVLPVFAW

Nucleotide

• Length: 912 bp

>NTDB_id=193962 A9P79_RS25640 WP_115704873.1 2951314..2952225(+) (pilD) [Cupriavidus taiwanensis strain SWF66294]
ATGCAGCCGGTGTGGTCCGCTACCCCCTATCCGACCGGAGCCGCGACCGGCACCGCCCCGCTGCTGCACGCGCTGGCGGC
GCTGCCGCCAGTCTTCCTGGTGGCGGCAGCGGGGCTGCTGGGCCTGGTGGTCGGCAGCTTCCTCAATGTGGTGATCCACC
GCGTGCCGCGCATGATGGAGCGCGACGAGGCCAACTACATTGCCGAGCTGCGCGGCGATCCGCTGCCCTACCCCTGCCGC
TACAACCTGATGGTGCCGCGCTCGGCCTGCCCGCATTGCGGCCACGCCATCGCCCCATGGGAGAACGTGCCGGTGCTGAG
CTACCTGTTCCTGCGCGGGCGCTGCTCGGCGTGCAAGGCGCCGATCAGCGTGCGCTATCCGCTGGTGGAACTGGCCAGCG
GCGTGCTGAGCGCACTGGTGGCATGGCGCTTCGGGCCGGGCGCGCAGGCGCTGGCCGCGCTGGTGCTGGTGTGGGGGCTG
GTGGCGCTGACCATGATCGATGCCGATACGCAATTGCTGCCGGACCAGATCACGCTGCCGCTGCTGTGGATCGGCCTGCT
GCTGAACCTGGCCGGCCTGTTCGTGGCGCTGCCCGATGCGGTGATCGGCGCCGCCGCCGGCTACCTGGTGCTGTGGCTCG
CCTACTGGCTGTTCCGGCTGCTGCGCGGCAAGGAAGGCATGGGTTTCGGCGACTTCAAGCTGATGGCGGCGCTGGGGGCC
TGGTTCGGCTGGCAGGCGCTGCCGGCGCTGGTGCTGCTGTCGTCGGTGGCGGGCGTGCTGTTCGGGCTGGCCAATATCGC
GCTGCGCCGCCAGGACCGCGACACGCCGTTCCCGTTCGGGCCCTTCATCGCGCTGGCCGGCGTGGTGGTGCTGCTGTTCG
GTCCCGGGGTGCTGCCGGTGTTTGCCTGGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (39-144)

• Type IV leader peptidase family (Peptidase_A24) (154-263)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.472	87.459	0.485
pilD	Vibrio campbellii strain DS40M4	51.825	90.429	0.469
pilD	Neisseria gonorrhoeae MS11	48.592	93.729	0.455
pilD	Acinetobacter baumannii D1279779	46.863	89.439	0.419
pilD	Acinetobacter nosocomialis M2	46.494	89.439	0.416