Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A9P79_RS17250 Genome accession   NZ_CP016950
Coordinates   1123734..1126166 (+) Length   810 a.a.
NCBI ID   WP_115706510.1    Uniprot ID   -
Organism   Cupriavidus taiwanensis strain SWF66294     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1118734..1131166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P79_RS17230 (A9P79_16955) - 1119538..1120656 (-) 1119 WP_240074084.1 hypothetical protein -
  A9P79_RS17235 (A9P79_16960) - 1120805..1122055 (+) 1251 WP_115662509.1 lipoprotein-releasing ABC transporter permease subunit -
  A9P79_RS17240 (A9P79_16965) lolD 1122048..1122788 (+) 741 WP_240074086.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  A9P79_RS17245 (A9P79_16970) - 1122802..1123662 (+) 861 WP_240074087.1 TatD family hydrolase -
  A9P79_RS17250 (A9P79_16975) comA 1123734..1126166 (+) 2433 WP_115706510.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A9P79_RS17255 (A9P79_16980) - 1126189..1127142 (-) 954 WP_240074089.1 MurR/RpiR family transcriptional regulator -
  A9P79_RS17260 (A9P79_16985) edd 1127407..1129293 (+) 1887 WP_240074090.1 phosphogluconate dehydratase -
  A9P79_RS17265 (A9P79_16990) - 1129364..1129870 (+) 507 WP_240074092.1 gluconokinase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 86336.71 Da        Isoelectric Point: 11.1589

>NTDB_id=193951 A9P79_RS17250 WP_115706510.1 1123734..1126166(+) (comA) [Cupriavidus taiwanensis strain SWF66294]
MRRFVVAFVAGCWALQQQSTLPQSHGLRLGAALLALCAIGMALWGRRLPALLQVLALAALAFAMAYCWAAWRAELRLREW
LPVALEARNLDVRGVVSGLPTRSPTGTRFAFTVEQSAGPDQPLPRQVILNWRDAPLELSPGQRFTLTLRLRRPRGLANPF
GFDYAYWLLAQGYGATGYVRRAHGPPQDAASERLAWRIEAWRAAVRDHLRAALPAGARYGAVLVALVIGDQRGIEADDWQ
LFRRTGVSHLVAISGLHITMVAGMAASLTGLLWRHSFGFGRWLRRPLPLWLPARQAALVVAVATALGYGMLAGMQIPALR
TVAMLCVAAVAVWGARAPPASVVLACAALVALLLDPWAVMLPGFWLSFGAVAVIFFAARPGRDAAIAGRWQRLRAALAAG
ARTQWAVTIGLVPLTLLLFGQVSVVSPFANAVAIPVVSLLVTPLALLGAALPLWLAVPVIAGAHFAMQGLAAVLAWFSML
PGALWEAASAGPVALLLAALGVAVLVAPVASARLRRHGALLMLPMLVARGPPVADGQFRAVMFDVGQGTAVLVRTRSHAL
LYDTGPGYVSGSSAGARVVVPLLRAEGVARLDHLMVSHEDIDHAGGVADIVGTVGVAARSTGAPAGHPLLDALNDGTGPA
QWNPCAAGQQWEWDGVRFAVLHPLPEQSQQAAIASNARSCVLRVDTAAHSLLLTGDIGLAQERALMGRMPAEALRADVLV
VAHHGSATSSGADWIETVGPAAAVFQLGYGNRYRHPNAEVWERFGRAGILRYRTDETGAVTMDTARAGYTLSMFRQAEPR
YWRERPPAPR

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=193951 A9P79_RS17250 WP_115706510.1 1123734..1126166(+) (comA) [Cupriavidus taiwanensis strain SWF66294]
GTGCGTCGCTTCGTGGTGGCATTCGTGGCCGGGTGCTGGGCCCTGCAGCAGCAGTCGACGCTGCCGCAATCGCACGGCCT
GCGCCTGGGCGCCGCGCTGCTGGCCTTGTGCGCCATCGGCATGGCCCTGTGGGGCAGGCGCCTGCCTGCCCTGCTGCAAG
TCCTGGCGCTGGCGGCGCTGGCCTTTGCCATGGCGTACTGCTGGGCTGCCTGGCGCGCCGAACTGCGCCTGCGCGAATGG
CTGCCCGTGGCGCTGGAGGCGCGCAACCTCGACGTGCGCGGGGTGGTCTCGGGGCTGCCCACTCGATCCCCCACCGGCAC
ACGCTTCGCGTTCACCGTCGAGCAGTCGGCGGGGCCGGACCAGCCGCTGCCGCGCCAGGTCATCCTCAACTGGCGCGACG
CGCCGCTCGAGTTAAGTCCGGGACAACGCTTTACGCTGACCCTGCGCCTGCGCCGCCCGCGCGGGCTCGCCAATCCGTTT
GGCTTCGATTACGCCTACTGGCTGCTAGCGCAAGGCTATGGCGCCACCGGCTACGTGCGCCGCGCCCACGGTCCGCCGCA
GGATGCCGCCTCGGAGCGGCTGGCCTGGCGCATCGAGGCCTGGCGTGCGGCCGTGCGCGACCACCTGCGCGCCGCGCTGC
CGGCCGGGGCACGTTACGGCGCGGTGCTGGTCGCGCTGGTGATCGGCGACCAGCGCGGCATCGAGGCGGACGACTGGCAA
TTGTTCCGGCGCACCGGCGTGAGCCACCTGGTCGCCATTTCGGGGCTGCATATCACCATGGTGGCCGGCATGGCGGCGTC
GCTGACCGGACTGTTGTGGCGCCACTCGTTCGGCTTTGGCCGCTGGCTGCGACGGCCACTGCCATTGTGGCTGCCGGCCC
GGCAAGCCGCGCTGGTGGTGGCGGTGGCCACCGCGCTGGGCTACGGCATGCTGGCCGGCATGCAGATCCCGGCGCTGCGC
ACCGTCGCCATGCTCTGCGTCGCGGCGGTCGCGGTGTGGGGGGCACGTGCGCCGCCGGCGTCGGTGGTGCTGGCCTGCGC
CGCGCTGGTGGCGCTGCTGCTGGACCCGTGGGCGGTCATGCTGCCCGGTTTCTGGCTGTCCTTCGGTGCCGTCGCGGTGA
TCTTCTTCGCTGCCCGGCCGGGACGCGACGCCGCCATCGCAGGGCGCTGGCAACGGCTGCGGGCCGCGCTTGCCGCGGGC
GCGCGCACCCAGTGGGCCGTGACCATCGGGCTGGTGCCGCTGACGCTGTTGCTGTTCGGCCAGGTCTCGGTGGTGTCGCC
GTTTGCCAATGCGGTGGCGATCCCCGTGGTCAGCCTGCTGGTAACGCCGCTGGCGCTGCTGGGTGCCGCGCTGCCGCTGT
GGCTGGCCGTGCCGGTCATCGCCGGTGCCCACTTTGCCATGCAGGGGCTGGCGGCCGTGCTGGCATGGTTCTCCATGCTG
CCCGGGGCATTGTGGGAGGCCGCCAGCGCGGGGCCAGTCGCGCTGCTGCTGGCCGCGCTTGGCGTGGCCGTGCTGGTGGC
GCCCGTGGCTTCGGCGCGCCTGCGCCGGCATGGCGCACTGCTGATGCTGCCGATGCTGGTGGCGCGCGGCCCGCCGGTGG
CCGATGGCCAGTTCCGCGCAGTGATGTTCGACGTCGGGCAGGGCACCGCGGTGCTGGTGCGCACGCGCTCGCATGCGCTG
CTGTACGACACTGGACCCGGCTATGTGTCGGGGTCCAGTGCGGGCGCTCGGGTGGTGGTGCCGCTATTACGCGCCGAAGG
GGTGGCGCGGCTCGACCACCTGATGGTCAGCCATGAAGACATCGATCATGCCGGCGGCGTGGCGGACATTGTAGGAACGG
TCGGCGTGGCGGCGCGCAGCACCGGTGCGCCAGCCGGCCACCCGCTGCTGGACGCGCTGAATGATGGGACCGGGCCGGCC
CAATGGAACCCATGCGCCGCGGGACAGCAATGGGAGTGGGACGGGGTGCGCTTTGCCGTGCTGCACCCGTTGCCTGAACA
GTCGCAGCAGGCCGCCATCGCCAGCAACGCGCGCAGTTGCGTGCTGCGCGTGGACACTGCCGCGCACAGCCTGCTGCTGA
CCGGCGATATCGGCCTGGCGCAGGAGCGTGCGTTGATGGGGCGCATGCCGGCCGAAGCCTTGCGCGCCGACGTGCTGGTG
GTGGCGCATCACGGCAGCGCTACGTCGTCCGGCGCGGACTGGATCGAGACGGTCGGGCCCGCGGCCGCGGTGTTCCAGCT
GGGCTATGGCAACCGCTATCGCCATCCGAACGCCGAAGTCTGGGAGCGCTTTGGCCGCGCGGGCATCCTGCGCTATCGCA
CCGACGAAACCGGCGCGGTGACCATGGACACGGCACGCGCGGGTTACACGCTGTCGATGTTCCGGCAGGCGGAGCCGCGC
TACTGGCGGGAGCGGCCGCCGGCGCCGCGCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(226-507)

Metallo-beta-lactamase superfamily (Lactamase_B)

(545-744)

Domain of unknown function (DUF4131) (DUF4131)

(27-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.305

100

0.488
  comA Pseudomonas stutzeri DSM 10701

39.052

96.42

0.377

Multiple sequence alignment