Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BARD7_RS15685 Genome accession   NZ_CP016913
Coordinates   3168963..3169652 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3163963..3174652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS15650 (BARD7_03197) - 3164162..3164644 (-) 483 WP_013353780.1 flagellar protein FlgN -
  BARD7_RS15655 (BARD7_03198) flgM 3164659..3164925 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  BARD7_RS15660 (BARD7_03199) - 3164995..3165414 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  BARD7_RS15665 comFC 3165488..3166177 (-) 690 WP_196769352.1 double zinc ribbon domain-containing protein Machinery gene
  BARD7_RS15670 (BARD7_03201) - 3166183..3166467 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  BARD7_RS15675 (BARD7_03202) comFA 3166526..3167911 (-) 1386 WP_065982452.1 DEAD/DEAH box helicase Machinery gene
  BARD7_RS15680 (BARD7_03203) - 3168018..3168866 (-) 849 WP_065982453.1 DegV family protein -
  BARD7_RS15685 (BARD7_03204) degU 3168963..3169652 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BARD7_RS15690 (BARD7_03205) degS 3169729..3170892 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator
  BARD7_RS15695 (BARD7_03206) - 3171115..3171762 (+) 648 WP_065982455.1 YigZ family protein -
  BARD7_RS15700 (BARD7_03207) - 3171767..3172948 (+) 1182 WP_065982456.1 LCP family protein -
  BARD7_RS15705 (BARD7_03208) - 3173049..3174125 (-) 1077 WP_060964142.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=193656 BARD7_RS15685 WP_003219701.1 3168963..3169652(-) (degU) [Bacillus amyloliquefaciens strain RD7-7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=193656 BARD7_RS15685 WP_003219701.1 3168963..3169652(-) (degU) [Bacillus amyloliquefaciens strain RD7-7]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGTGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTCTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTATTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment