Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BARD7_RS15675 Genome accession   NZ_CP016913
Coordinates   3166526..3167911 (-) Length   461 a.a.
NCBI ID   WP_065982452.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3161526..3172911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS15640 (BARD7_03195) flgL 3161700..3162617 (-) 918 WP_065982449.1 flagellar hook-associated protein FlgL -
  BARD7_RS15645 (BARD7_03196) flgK 3162629..3164146 (-) 1518 WP_065982450.1 flagellar hook-associated protein FlgK -
  BARD7_RS15650 (BARD7_03197) - 3164162..3164644 (-) 483 WP_013353780.1 flagellar protein FlgN -
  BARD7_RS15655 (BARD7_03198) flgM 3164659..3164925 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  BARD7_RS15660 (BARD7_03199) - 3164995..3165414 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  BARD7_RS15665 comFC 3165488..3166177 (-) 690 WP_196769352.1 double zinc ribbon domain-containing protein Machinery gene
  BARD7_RS15670 (BARD7_03201) - 3166183..3166467 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  BARD7_RS15675 (BARD7_03202) comFA 3166526..3167911 (-) 1386 WP_065982452.1 DEAD/DEAH box helicase Machinery gene
  BARD7_RS15680 (BARD7_03203) - 3168018..3168866 (-) 849 WP_065982453.1 DegV family protein -
  BARD7_RS15685 (BARD7_03204) degU 3168963..3169652 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BARD7_RS15690 (BARD7_03205) degS 3169729..3170892 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator
  BARD7_RS15695 (BARD7_03206) - 3171115..3171762 (+) 648 WP_065982455.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52687.26 Da        Isoelectric Point: 10.1515

>NTDB_id=193655 BARD7_RS15675 WP_065982452.1 3166526..3167911(-) (comFA) [Bacillus amyloliquefaciens strain RD7-7]
MSGGASEFSEVRDFFYGKHLLRSEIPFSDQCIKRFIEEKYITAEPSVIRRKNRYVCRRCGQSDQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNQVAEKSWEPIKLSWEGTLTDGQKQAADALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSETLKKRAEASLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRVPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRVDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=193655 BARD7_RS15675 WP_065982452.1 3166526..3167911(-) (comFA) [Bacillus amyloliquefaciens strain RD7-7]
ATGTCCGGAGGTGCTTCAGAATTTTCGGAGGTGCGGGATTTCTTTTACGGCAAGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAACGTTTTATAGAAGAAAAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTGACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGGAGAGCTGATGAACTGACGTCATTATACTCTTGGAATCAAGTTGCTGAAAAGAG
CTGGGAGCCTATAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGATGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTAGAAGTTTCTGCTCTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCT
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCGGA
GACATTAAAAAAGAGGGCTGAGGCCAGCTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGAGTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAAAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAGG
GACGGGTTGACTTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCCAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(327-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.582

99.132

0.62

Multiple sequence alignment