Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BARD7_RS13805 Genome accession   NZ_CP016913
Coordinates   2794570..2795214 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2789570..2800214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS13770 (BARD7_02820) - 2790755..2791186 (+) 432 WP_045509497.1 Na(+)/H(+) antiporter subunit B -
  BARD7_RS13775 (BARD7_02821) - 2791186..2791527 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  BARD7_RS13780 (BARD7_02822) - 2791520..2793001 (+) 1482 WP_065982195.1 Na+/H+ antiporter subunit D -
  BARD7_RS13785 (BARD7_02823) - 2793007..2793483 (+) 477 WP_065982196.1 Na+/H+ antiporter subunit E -
  BARD7_RS13790 (BARD7_02824) - 2793483..2793767 (+) 285 WP_045509491.1 Na(+)/H(+) antiporter subunit F1 -
  BARD7_RS13795 (BARD7_02825) mnhG 2793751..2794125 (+) 375 WP_065982197.1 monovalent cation/H(+) antiporter subunit G -
  BARD7_RS13800 (BARD7_02826) - 2794165..2794548 (-) 384 WP_065982198.1 hotdog fold thioesterase -
  BARD7_RS13805 (BARD7_02827) comA 2794570..2795214 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  BARD7_RS13810 (BARD7_02828) comP 2795295..2797601 (-) 2307 WP_065982199.1 sensor histidine kinase Regulator
  BARD7_RS13815 (BARD7_02829) - 2797620..2797799 (-) 180 WP_269465882.1 competence pheromone ComX -
  BARD7_RS13820 (BARD7_02830) comQ 2797803..2798735 (-) 933 WP_269465883.1 class 1 isoprenoid biosynthesis enzyme Regulator
  BARD7_RS13825 (BARD7_02831) degQ 2798866..2799006 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  BARD7_RS13830 (BARD7_02832) - 2799471..2799812 (+) 342 WP_065982200.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=193648 BARD7_RS13805 WP_014472195.1 2794570..2795214(-) (comA) [Bacillus amyloliquefaciens strain RD7-7]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=193648 BARD7_RS13805 WP_014472195.1 2794570..2795214(-) (comA) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTTGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAATGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment