Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BARD7_RS01965 Genome accession   NZ_CP016913
Coordinates   423859..424812 (+) Length   317 a.a.
NCBI ID   WP_065980703.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418859..429812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS01940 (BARD7_00392) - 418889..420316 (+) 1428 WP_161957667.1 sensor histidine kinase -
  BARD7_RS01945 (BARD7_00393) rapC 420476..421624 (+) 1149 WP_065980700.1 tetratricopeptide repeat protein Regulator
  BARD7_RS01950 (BARD7_00394) phrC 421608..421727 (+) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BARD7_RS01955 (BARD7_00395) - 421875..421985 (-) 111 WP_065980701.1 YjcZ family sporulation protein -
  BARD7_RS01960 (BARD7_00396) - 422080..423444 (-) 1365 WP_065980702.1 aspartate kinase -
  BARD7_RS01965 (BARD7_00397) ceuB 423859..424812 (+) 954 WP_065980703.1 ABC transporter permease Machinery gene
  BARD7_RS01970 (BARD7_00398) - 424802..425749 (+) 948 WP_065980704.1 iron chelate uptake ABC transporter family permease subunit -
  BARD7_RS01975 (BARD7_00399) - 425743..426501 (+) 759 WP_065980705.1 ABC transporter ATP-binding protein -
  BARD7_RS01980 (BARD7_00400) - 426523..427473 (+) 951 WP_065980706.1 siderophore ABC transporter substrate-binding protein -
  BARD7_RS01985 (BARD7_00401) - 427514..428938 (-) 1425 WP_065980707.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34947.21 Da        Isoelectric Point: 9.6741

>NTDB_id=193599 BARD7_RS01965 WP_065980703.1 423859..424812(+) (ceuB) [Bacillus amyloliquefaciens strain RD7-7]
MKLRYLLLLLAALACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=193599 BARD7_RS01965 WP_065980703.1 423859..424812(+) (ceuB) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGCATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTATCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
CATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGCTACGAGCTTTTATACTTGAGTATCCC
GCTGGTGATCATCGCTTACGTGTATGCGGATAAGTTTACGGTGGCTGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATCGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment