Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   S101267_RS15030 Genome accession   NZ_CP021505
Coordinates   2900100..2901104 (-) Length   334 a.a.
NCBI ID   WP_013353210.1    Uniprot ID   A0A9P1NIY9
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2895100..2906104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS15005 (S101267_03010) - 2896059..2896691 (+) 633 WP_065118594.1 GNAT family N-acetyltransferase -
  S101267_RS15010 (S101267_03011) - 2896716..2897363 (+) 648 WP_013353206.1 acetoin utilization AcuB family protein -
  S101267_RS15015 (S101267_03012) - 2897360..2898526 (+) 1167 WP_013353207.1 acetoin utilization protein AcuC -
  S101267_RS15020 (S101267_03013) motS 2898536..2899225 (-) 690 WP_041481663.1 flagellar motor protein MotS -
  S101267_RS15025 (S101267_03014) motP 2899215..2900030 (-) 816 WP_013353209.1 flagellar motor protein MotP -
  S101267_RS15030 (S101267_03015) ccpA 2900100..2901104 (-) 1005 WP_013353210.1 catabolite control protein A Regulator
  S101267_RS15035 (S101267_03016) - 2901382..2902458 (-) 1077 WP_013353211.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  S101267_RS15040 (S101267_03017) ytxJ 2902694..2903020 (-) 327 WP_013353212.1 bacillithiol system redox-active protein YtxJ -
  S101267_RS15045 (S101267_03018) - 2903046..2903459 (-) 414 WP_013353213.1 YtxH domain-containing protein -
  S101267_RS15050 (S101267_03019) - 2903492..2903914 (-) 423 WP_013353214.1 DUF948 domain-containing protein -
  S101267_RS15055 (S101267_03020) murC 2904071..2905369 (-) 1299 WP_013353215.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36868.21 Da        Isoelectric Point: 4.9206

>NTDB_id=193553 S101267_RS15030 WP_013353210.1 2900100..2901104(-) (ccpA) [Bacillus amyloliquefaciens strain SRCM101267]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISSIFYAELA
RGIEDIATMYKYNIILSNSDQNLEKELHLLNTMLGKQVDGIVFMGGNITDEHVEEFKRSPVPIVLAASVEEQGETPSVAI
DYEQAIYDAVKLFIDKGHRDIAFVSGPMAEPINRSKKLQGYKRALEEAGIAFNEQFVAEGDYTYDSGMEALQSLMGLDRK
PTAILSATDEMALGIIHAAQDQGMSIPDDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRQSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=193553 S101267_RS15030 WP_013353210.1 2900100..2901104(-) (ccpA) [Bacillus amyloliquefaciens strain SRCM101267]
GTGAGCAACATTACGATATACGATGTGGCCAGAGAAGCAAATGTCAGCATGGCGACTGTTTCCCGCGTCGTAAACGGCAA
TCCGAATGTAAAACCGACGACCAGAAAAAAAGTATTGGAAGCCATTGACCGCCTCGGCTACCGCCCGAACGCGGTGGCAA
GAGGACTGGCAAGCAAAAAAACGACTACGGTCGGCGTCATCATCCCTGATATCTCAAGTATTTTTTACGCGGAACTTGCG
CGGGGAATTGAAGATATCGCGACGATGTACAAATATAATATTATTTTAAGCAATTCAGACCAAAATCTCGAGAAGGAACT
GCACCTGTTAAATACGATGCTCGGTAAACAAGTAGACGGTATCGTATTTATGGGCGGCAACATTACGGACGAGCATGTCG
AAGAATTTAAGCGCTCTCCCGTTCCGATCGTATTGGCTGCGTCAGTTGAAGAACAGGGCGAGACGCCTTCTGTCGCCATT
GATTATGAACAGGCGATTTATGATGCCGTCAAGCTTTTCATTGATAAGGGGCATCGCGATATCGCATTTGTCTCCGGACC
GATGGCAGAGCCGATCAACCGTTCGAAAAAACTGCAAGGGTACAAACGGGCGCTTGAAGAAGCGGGCATTGCGTTTAACG
AGCAGTTCGTGGCGGAAGGCGATTACACCTATGATTCCGGGATGGAGGCGCTTCAAAGCTTGATGGGCCTTGACCGGAAA
CCGACGGCGATCCTTTCTGCGACGGATGAAATGGCTCTCGGCATTATTCATGCGGCCCAGGATCAGGGTATGTCGATTCC
TGACGATCTTGACATTATCGGTTTTGACAATACGAGATTGAGCCTGATGGTCCGCCCTCAGCTTTCAACAGTCGTGCAGC
CTACGTACGATATCGGCGCCGTGGCGATGAGACTTTTGACAAAACTGATGAACAAAGAGCCGGTTGAAGAGCATATCGTT
GAATTGCCTCACCGCATCGAATTAAGACAATCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NIY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.242

98.802

0.536
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.03

98.802

0.524
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.904

99.401

0.506