Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BEN76_RS14455 Genome accession   NZ_CP016896
Coordinates   3054826..3056244 (-) Length   472 a.a.
NCBI ID   WP_076033375.1    Uniprot ID   A0A1P8ELN8
Organism   Acinetobacter soli strain GFJ2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3049826..3061244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS14440 (BEN76_14440) lptG 3050897..3051967 (+) 1071 WP_076033374.1 LPS export ABC transporter permease LptG -
  BEN76_RS14445 (BEN76_14445) gpmI 3052090..3053637 (+) 1548 WP_004944141.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BEN76_RS14450 (BEN76_14450) - 3053649..3054824 (+) 1176 WP_025096177.1 S41 family peptidase -
  BEN76_RS14455 (BEN76_14455) pilR 3054826..3056244 (-) 1419 WP_076033375.1 sigma-54-dependent transcriptional regulator Regulator
  BEN76_RS14460 (BEN76_14460) pilS 3056272..3057840 (-) 1569 WP_048766006.1 sensor histidine kinase Regulator
  BEN76_RS14465 (BEN76_14465) - 3057863..3058498 (-) 636 WP_004932261.1 response regulator -
  BEN76_RS14470 (BEN76_14470) pbpG 3058712..3059770 (+) 1059 WP_004932264.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BEN76_RS14475 (BEN76_14475) thrC 3059837..3060976 (-) 1140 WP_076033376.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53088.01 Da        Isoelectric Point: 6.3761

>NTDB_id=193541 BEN76_RS14455 WP_076033375.1 3054826..3056244(-) (pilR) [Acinetobacter soli strain GFJ2]
MTILQPRVLLIDDEEDLCSLMQISLSRMGIHTDCAYNVEQAKQLLATHEYNACLTDLNLPDGHGLDLIDHVNEHFPYIPI
AVITAYGNMEIAISALKAGAFDFVSKPINPQHLKQLIQTALNGSQMHPDNDRETLEHQLLIGQSEPIEALRIALRKISRS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPAELMESELFGHKKGSFTGATQDKQGLIQAAQGGSLFLDE
VAELPLSMQVKLLRAIQEKKIRPLGSEHEIDVDFRVISASHQQLEQLVQQGKFRQDLFFRIHVMDITLPPLRERGDDILI
LARHFIGHVCRDWIIPIKQLTAAAEEFLLHYPFPGNVRELRNMIERAITLSETAFIDVQHLNGSSLRDYTSAVTEATDYL
KIPRVIAQQPETKTKLPHEGLEQYLEKIEKEILLNALNCSHWNRTLAAKKLGMSFRSLRYRLKKFGLDTGES

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=193541 BEN76_RS14455 WP_076033375.1 3054826..3056244(-) (pilR) [Acinetobacter soli strain GFJ2]
ATGACCATTCTTCAGCCACGTGTATTACTGATCGATGACGAAGAAGATCTTTGTTCATTGATGCAAATTAGCCTGTCGCG
CATGGGCATCCATACAGATTGTGCCTACAATGTAGAGCAGGCCAAACAATTGCTTGCGACACATGAATACAACGCCTGTC
TGACCGACCTCAATCTACCCGATGGTCATGGACTAGATTTGATTGATCATGTGAATGAACATTTTCCGTATATTCCGATT
GCTGTGATCACAGCCTATGGCAACATGGAAATTGCCATTTCAGCGCTTAAGGCGGGTGCGTTTGATTTTGTCAGTAAACC
GATCAATCCGCAGCATCTGAAACAACTGATACAGACCGCACTTAACGGCAGCCAGATGCATCCCGACAATGATAGGGAAA
CTCTTGAACACCAGCTCTTGATTGGGCAATCTGAACCCATTGAAGCACTTCGGATTGCACTACGAAAAATCTCGCGCTCA
CAGGCGCCGGTCTTTATTACCGGTGAATCCGGAACAGGTAAAGAAGTGGTGGCCAATCTCGTTCATCGCTTAAGTAATCG
TAATGAAGGCCCTTTTATTGCGATTAACTGTGGTGCAATTCCAGCCGAACTGATGGAAAGTGAATTATTTGGGCATAAAA
AAGGCAGTTTTACCGGTGCCACACAAGACAAGCAAGGGTTGATACAAGCGGCACAAGGCGGCAGTCTGTTTCTCGATGAA
GTGGCAGAATTACCGCTGAGCATGCAGGTCAAATTGTTACGCGCTATTCAGGAAAAGAAAATTCGCCCCCTCGGATCTGA
GCACGAAATCGATGTGGATTTTCGAGTGATCAGTGCCAGTCATCAACAGCTTGAACAACTGGTTCAACAGGGCAAATTTC
GCCAAGATTTGTTTTTTCGTATTCATGTCATGGACATTACCCTGCCACCGCTACGAGAGCGTGGAGACGATATTTTGATT
TTAGCACGACATTTTATTGGGCATGTCTGTCGTGACTGGATCATCCCGATCAAGCAACTGACCGCAGCAGCTGAAGAATT
TTTACTACATTATCCGTTTCCGGGGAATGTACGTGAATTACGCAACATGATCGAACGTGCCATTACTTTAAGTGAAACTG
CATTTATCGACGTGCAACACTTAAATGGCTCCTCCCTACGCGACTATACTTCCGCAGTAACTGAAGCAACCGATTATCTT
AAAATTCCACGTGTGATCGCACAGCAGCCTGAAACTAAAACCAAGCTTCCTCACGAAGGGCTCGAGCAATATCTTGAAAA
AATTGAAAAAGAGATATTATTAAATGCATTGAATTGTAGTCACTGGAATCGAACCTTGGCCGCAAAAAAACTCGGCATGA
GCTTTCGCTCACTTCGCTATCGCTTGAAGAAATTTGGTCTTGATACTGGAGAAAGTTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8ELN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

72.903

98.517

0.718
  pilR Pseudomonas aeruginosa PAK

49.567

97.881

0.485

Multiple sequence alignment