Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BEN76_RS14460 Genome accession   NZ_CP016896
Coordinates   3056272..3057840 (-) Length   522 a.a.
NCBI ID   WP_048766006.1    Uniprot ID   A0A0M1I6U9
Organism   Acinetobacter soli strain GFJ2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3051272..3062840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS14445 (BEN76_14445) gpmI 3052090..3053637 (+) 1548 WP_004944141.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  BEN76_RS14450 (BEN76_14450) - 3053649..3054824 (+) 1176 WP_025096177.1 S41 family peptidase -
  BEN76_RS14455 (BEN76_14455) pilR 3054826..3056244 (-) 1419 WP_076033375.1 sigma-54-dependent transcriptional regulator Regulator
  BEN76_RS14460 (BEN76_14460) pilS 3056272..3057840 (-) 1569 WP_048766006.1 sensor histidine kinase Regulator
  BEN76_RS14465 (BEN76_14465) - 3057863..3058498 (-) 636 WP_004932261.1 response regulator -
  BEN76_RS14470 (BEN76_14470) pbpG 3058712..3059770 (+) 1059 WP_004932264.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  BEN76_RS14475 (BEN76_14475) thrC 3059837..3060976 (-) 1140 WP_076033376.1 threonine synthase -
  BEN76_RS14480 (BEN76_14480) - 3061037..3062338 (-) 1302 WP_004932270.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58693.05 Da        Isoelectric Point: 6.7782

>NTDB_id=193542 BEN76_RS14460 WP_048766006.1 3056272..3057840(-) (pilS) [Acinetobacter soli strain GFJ2]
MPAPALSTQLSYTIYRLGAWYGAYRVIIGLSLILIFYTTGQGHSSDYLHPELYVFTLVIYTLLSFMQGGVFKFSTRWIAS
QLTLLFIVDIVVLSLLTYAVGSPSLHLSMLYVVTVFSAAILLQARMSLTVTLLAVIVVIYQQVVLVLFDKDHLSSISNSI
LLAFLFFVVYGIGQIAVRRFQLLENIANHQSDVLNQLQNINRYILDQAKEGYLVLDESYHVVVCNPAASSFLGIQPLFAH
EQLPLVNLQPDLVEVLRSTSLQDGETFNFESQFSTYRLHVRIQRLRVPQQSLILLILQDAQRMNQRVQQLKLAALGQLSA
SIAHEIRNPLAAIAQANELLSDSELHEQQQLQNMIRKQTKRINGIIEDTLGMARNQTTTPITIQLNPFLQSLLHEDLNDV
QQKLELQLPAHDVSIVFDPSQLRQVLVNLIRNALRHNAPDAPAVQIVVQLASTSIWIDIVDFGEGVTKRNLSQLFKPFFS
TEIQGTGLGLYLSQSLCEANHAKLTYVEQDKGACFRIHCPIN

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=193542 BEN76_RS14460 WP_048766006.1 3056272..3057840(-) (pilS) [Acinetobacter soli strain GFJ2]
ATGCCGGCGCCTGCTCTGTCTACCCAGCTGTCGTATACGATTTATCGTTTAGGCGCTTGGTATGGTGCCTATCGTGTCAT
TATTGGCTTAAGTTTGATTCTGATCTTTTACACCACAGGTCAGGGTCACAGCTCAGACTATTTACATCCCGAACTTTACG
TTTTTACACTGGTGATTTACACCTTGCTCAGCTTTATGCAAGGTGGAGTATTTAAATTCTCTACACGATGGATTGCCTCA
CAGCTCACCTTGCTGTTTATTGTCGACATTGTGGTACTGAGTTTACTCACCTACGCCGTGGGCAGCCCAAGTCTGCACTT
GAGCATGCTGTACGTGGTGACGGTCTTTTCGGCGGCGATTTTGCTGCAAGCACGAATGTCACTGACCGTTACACTTCTCG
CGGTCATTGTGGTGATCTATCAGCAAGTGGTGTTGGTCCTGTTTGACAAAGACCATCTCAGCTCGATCAGCAACAGTATT
TTGCTGGCTTTTTTATTTTTTGTGGTTTACGGAATTGGGCAAATCGCGGTGCGACGTTTTCAGTTACTTGAGAACATTGC
CAATCATCAATCTGACGTGCTCAATCAACTCCAAAATATCAATCGTTATATTCTAGATCAGGCCAAAGAGGGTTATCTAG
TACTCGACGAAAGTTATCATGTTGTGGTGTGTAATCCCGCAGCGTCGAGTTTTTTAGGCATACAGCCGCTTTTTGCGCAT
GAACAATTGCCATTGGTGAATCTTCAGCCAGACTTAGTTGAAGTGCTCAGATCGACCTCGCTGCAAGATGGTGAAACATT
CAATTTTGAATCACAGTTTTCTACTTATCGTCTTCATGTGCGTATTCAGCGTTTACGGGTTCCGCAGCAATCCTTAATCT
TGTTGATCTTGCAAGACGCTCAAAGAATGAATCAACGTGTTCAGCAGTTAAAACTTGCCGCATTGGGGCAACTCTCGGCC
AGTATTGCCCACGAAATTCGCAATCCTTTGGCTGCAATTGCCCAAGCCAATGAATTACTGTCTGATAGTGAACTGCATGA
GCAGCAGCAATTGCAGAACATGATCAGAAAACAAACCAAACGGATCAATGGCATTATTGAAGATACGCTCGGGATGGCGC
GTAATCAGACCACCACCCCAATCACCATCCAGCTCAATCCGTTTTTACAGAGTTTATTGCACGAAGACTTAAATGATGTA
CAGCAGAAATTAGAACTTCAGCTCCCAGCACATGATGTATCGATTGTGTTTGATCCATCTCAACTCCGGCAAGTGCTGGT
CAATCTGATTCGAAATGCACTTCGTCACAATGCACCAGATGCACCCGCAGTACAGATTGTGGTGCAGTTGGCATCGACTT
CGATCTGGATTGATATTGTCGATTTTGGTGAGGGCGTAACAAAACGTAATCTTTCGCAACTGTTTAAACCGTTTTTTAGT
ACCGAAATTCAGGGAACTGGTTTAGGATTGTATTTATCACAGAGTCTTTGCGAGGCGAATCATGCCAAGCTGACCTATGT
TGAACAAGATAAAGGGGCATGCTTTAGAATCCACTGCCCAATAAATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-377)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I6U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.465

98.851

0.598

Multiple sequence alignment