Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BEN76_RS11595 Genome accession   NZ_CP016896
Coordinates   2423825..2428180 (-) Length   1451 a.a.
NCBI ID   WP_076033112.1    Uniprot ID   A0A1P8EK85
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2418825..2433180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS11560 (BEN76_11560) - 2419484..2420455 (+) 972 WP_076033109.1 lipase family alpha/beta hydrolase -
  BEN76_RS11565 (BEN76_11565) rplS 2420523..2420894 (-) 372 WP_004934323.1 50S ribosomal protein L19 -
  BEN76_RS11570 (BEN76_11570) trmD 2421104..2421838 (-) 735 WP_004934319.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BEN76_RS11575 (BEN76_11575) rimM 2421887..2422435 (-) 549 WP_076033110.1 ribosome maturation factor RimM -
  BEN76_RS11580 (BEN76_11580) rpsP 2422453..2422710 (-) 258 WP_004934313.1 30S ribosomal protein S16 -
  BEN76_RS11585 (BEN76_11585) comF 2422852..2423286 (-) 435 WP_076033596.1 type IV pilin protein Machinery gene
  BEN76_RS11590 (BEN76_11590) comE 2423286..2423759 (-) 474 WP_076033111.1 type IV pilin protein Machinery gene
  BEN76_RS11595 (BEN76_11595) comC 2423825..2428180 (-) 4356 WP_076033112.1 PilC/PilY family type IV pilus protein Machinery gene
  BEN76_RS11600 (BEN76_11600) pilX 2428198..2428866 (-) 669 WP_076033113.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BEN76_RS11605 (BEN76_11605) comB 2428863..2429831 (-) 969 WP_076033114.1 PilW family protein Machinery gene
  BEN76_RS11610 (BEN76_11610) pilV 2429832..2430368 (-) 537 WP_076033115.1 type IV pilus modification protein PilV Machinery gene
  BEN76_RS11615 (BEN76_11615) - 2430365..2430811 (-) 447 WP_076033116.1 pilus assembly FimT family protein -
  BEN76_RS11620 (BEN76_11620) ispH 2430932..2431882 (-) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BEN76_RS11625 (BEN76_11625) gmk 2432018..2432641 (+) 624 WP_025095725.1 guanylate kinase -
  BEN76_RS11630 (BEN76_11630) rpoZ 2432710..2432991 (+) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 1451 a.a.        Molecular weight: 157108.62 Da        Isoelectric Point: 7.9081

>NTDB_id=193526 BEN76_RS11595 WP_076033112.1 2423825..2428180(-) (comC) [Acinetobacter soli strain GFJ2]
MKNKKSKRFNPLLGTATPQHHRMLCTAMMSVSLIIACNAQASDVEVYHQGAQFDKRLMLMVDQSRTMGGAGALDLLKEYP
ICVGKGVSNILGSGGGLGLLGDKDALELVTNTVGAVDQVALQGLLGGSLDPLLKITTESPSSKYNYARNYCTVVTTDLVV
KTLDGLLKPLLGATGLDAKSYIENTCDFQANVKLLNSVSAVGVYRCYDKLSRVKNALTDVLLGNSSTGLKPLPDNVSVGI
SVMPVDVMTNDRAGRILAPACKLSTTRASDINFRCFEKTYTGSATTYRNYLVEKIAGNIQSKGDFNLQNVLVIVPKLIAA
LVGDIFSKLWSILSDPLKGLSELLEFKGTASTVNDLLKTLGLAGNVPTASTYAETGAYLMGTTTKGTGARQMALEVDILQ
LLGLGLLTKRYNCDAYGTNDDRNWEADGTCKQNAWNYKWLGIGYTRDSSWIVVSNDLVSGLLGDNLLTNIVGVVAKINSR
TLYYGYHAQQDSEYSGFSNSVDASKRSTTFYRAPTDTPQCNANGIMVITGGVPNITPTVTDALLKQGAEGLGTQNAIERL
MGRSLNTSATDLSKLDLSNVFQCDASAGLKSTTLSSRDYATWSCIGNYTKKLLDKNITTGVIGVGREFTTIPSTTDSAQL
EASMTGVNNSLLGQIVPNLLKDTLNVLLGGTLVNGLTSLLGNVFPTDAEDVKNLARWGVLGKGGWYNSASSENIANSIYN
FYANLGISNRETFLGVPVVPTDPLTPYNLDNYVFQNMFVPDDKQTWFGNVKKYLADTGETIQTKTITDVWSNSNIQSTKT
SILTGGFADKLPTATSSSASSRQLYVNRACITKDKKYDVSASIGLIGNDYYTKLCESQSKDPRRSDLMNLLGYQIQTTNN
QESLIAKPEYKKVGMVLHSSPIKITQSATIKNDGSLTRDDYLVFGTVQGLLHVVNASTGVEKFAFLPNELLENAKQRKAF
TGTNLEGHDNFNNMQYGIDAPWTAYSEYVWNTKDGKLTVGKSATDATCIKDGVSTGACGKQYLYGGLRMGGRSYYALDLS
LWDDQTKPSLKFYIDPASGKVYSSTTPEGKSFDAIKYMGQSWSKPTVAWVNWQGKRKLVIFVGGGYDAGGNDGNANNGGY
EQVSYAQSNKIGSGVYMFDAENGDLLWWASNLATTANTGATMALKTNMQYSVVSRINAVDRNGDGLVDHLYFGDLGGQLW
RVDINNGSNPQQFAQAAQLLDLQNNKPSDLTDANLRFYEAPIFSVYGYGANSLAVLSIATTNRSLPISDQSAGVVFNLFD
NDVTQVSFSTRDMAANNKNLVAYAQLPKYGELTMVNRPQYGWYAKLSNQQKVMDEPVVINKNLYVSIFDPIAQEGRVADC
SIGVQGLSSVRRFCLPYGVCEKSADLTTTLKLGKGILPVTIGAGTTSNGVTTRQILGGSSTDRDSTKDVLSSTQTTRRQI
VPLKWYEQYTP

Nucleotide


Download         Length: 4356 bp        

>NTDB_id=193526 BEN76_RS11595 WP_076033112.1 2423825..2428180(-) (comC) [Acinetobacter soli strain GFJ2]
ATGAAAAACAAGAAATCTAAAAGATTTAATCCCTTACTAGGTACCGCTACACCTCAGCATCATCGGATGCTGTGTACAGC
TATGATGAGCGTTTCACTGATAATTGCATGCAACGCTCAGGCCAGTGATGTCGAGGTTTATCATCAAGGAGCACAATTTG
ATAAGCGTTTAATGCTGATGGTCGATCAGTCCCGCACCATGGGGGGAGCAGGAGCACTCGATTTATTAAAAGAATATCCT
ATTTGTGTGGGGAAAGGTGTCTCTAATATTTTAGGTTCAGGGGGTGGGCTGGGGCTGCTAGGCGATAAAGACGCGCTTGA
GTTGGTTACCAATACCGTAGGTGCAGTCGATCAGGTGGCTTTACAGGGCTTACTGGGCGGAAGTCTAGATCCGCTGTTAA
AGATCACCACAGAGTCACCGAGCAGTAAATACAACTATGCACGCAATTACTGTACCGTGGTCACCACAGATTTGGTGGTA
AAAACACTCGATGGTTTATTAAAACCGCTGCTGGGTGCAACCGGGCTAGACGCCAAAAGTTATATCGAAAATACCTGTGA
TTTTCAGGCCAATGTCAAACTGCTGAACAGTGTTTCTGCGGTGGGTGTCTATCGATGCTATGACAAACTTTCACGTGTCA
AAAATGCCTTAACGGACGTATTGCTTGGAAATAGTAGTACAGGGCTCAAACCTCTGCCAGACAATGTCAGTGTCGGGATA
TCGGTCATGCCGGTTGATGTTATGACCAACGATCGTGCGGGACGTATTTTGGCGCCTGCCTGTAAGCTGTCGACCACTCG
AGCCAGTGATATCAATTTCCGTTGTTTTGAAAAGACCTACACAGGGAGTGCCACCACGTATCGTAACTATCTAGTCGAAA
AAATTGCAGGAAATATTCAGTCCAAAGGCGATTTTAATCTACAAAATGTATTGGTGATTGTACCAAAACTGATTGCAGCG
TTGGTGGGTGATATCTTTAGTAAACTCTGGAGTATTTTGTCCGATCCACTAAAAGGCCTATCCGAGTTATTAGAATTTAA
GGGTACAGCCAGCACCGTTAATGATTTGCTCAAAACTCTTGGGCTGGCAGGCAATGTTCCAACCGCCAGTACCTATGCAG
AGACGGGTGCCTATTTGATGGGAACCACCACCAAGGGTACCGGTGCGCGCCAAATGGCATTAGAAGTAGACATCTTGCAA
CTATTGGGCTTGGGACTTCTCACCAAACGTTACAATTGTGATGCTTACGGCACCAATGATGACCGTAACTGGGAAGCAGA
TGGTACCTGTAAGCAAAATGCTTGGAATTACAAATGGCTTGGGATTGGCTATACAAGAGACAGTAGCTGGATTGTGGTTT
CAAACGATTTGGTAAGTGGCCTGTTAGGCGATAATTTGCTCACCAACATTGTAGGAGTAGTTGCCAAGATCAATAGTCGA
ACATTGTATTACGGTTATCACGCGCAGCAAGATTCCGAATATAGCGGCTTTAGTAATTCGGTCGATGCCAGCAAACGTTC
TACTACATTTTATCGCGCACCGACAGACACACCGCAATGTAATGCTAACGGTATTATGGTGATTACTGGTGGCGTACCAA
ATATCACCCCAACGGTTACCGATGCACTGCTTAAGCAAGGTGCGGAAGGGTTGGGCACACAAAATGCGATTGAGCGTTTG
ATGGGCCGTTCACTCAATACTTCGGCCACAGACTTGTCGAAGCTTGATCTTAGTAACGTTTTTCAGTGTGATGCATCGGC
AGGATTAAAATCGACCACTTTAAGTAGCCGTGATTATGCCACGTGGAGCTGCATTGGTAATTACACCAAAAAGCTACTCG
ATAAAAATATCACCACGGGTGTGATTGGCGTTGGGCGTGAATTTACCACGATTCCAAGCACTACAGATTCAGCCCAGCTT
GAAGCATCTATGACGGGTGTAAATAATTCGTTATTGGGCCAAATTGTTCCGAATTTATTAAAAGACACTTTAAACGTATT
GCTTGGTGGTACGTTGGTGAATGGTTTAACCAGTTTGCTTGGCAATGTGTTTCCAACTGATGCCGAGGATGTCAAAAATC
TGGCACGGTGGGGCGTACTGGGTAAAGGGGGCTGGTATAACTCAGCCAGCTCAGAAAATATTGCCAACAGTATTTATAAC
TTCTATGCCAATTTGGGCATTAGTAACCGGGAAACCTTTTTAGGCGTACCTGTGGTGCCAACAGATCCACTTACCCCATA
CAATCTTGATAACTATGTTTTTCAAAACATGTTTGTTCCCGACGACAAACAAACTTGGTTTGGGAATGTAAAAAAATATC
TGGCCGATACAGGTGAAACGATTCAGACCAAAACCATCACCGATGTCTGGAGTAATAGCAACATACAATCCACCAAAACC
AGTATTTTAACGGGTGGGTTTGCAGACAAATTACCTACAGCGACCAGTAGCAGTGCATCTAGCCGGCAGTTATACGTGAA
CCGCGCGTGCATCACGAAAGATAAAAAATATGATGTTTCCGCTTCAATTGGGCTGATTGGAAACGACTACTATACCAAGC
TCTGCGAAAGTCAAAGTAAAGACCCGCGTCGTAGCGATTTGATGAACCTGCTGGGCTATCAAATTCAAACCACCAATAAT
CAAGAAAGTCTGATTGCCAAACCTGAATATAAAAAAGTCGGGATGGTGCTTCATTCATCGCCAATCAAAATTACCCAGTC
GGCTACCATTAAAAATGATGGTTCATTGACACGTGATGATTATTTGGTATTTGGTACCGTGCAAGGGCTTTTACATGTGG
TCAATGCCAGTACAGGTGTAGAAAAATTTGCATTTTTACCCAATGAGCTACTTGAAAATGCCAAGCAGCGTAAAGCCTTT
ACAGGTACAAATCTTGAGGGACACGACAACTTTAACAATATGCAATACGGTATTGATGCGCCGTGGACCGCCTACAGTGA
ATACGTGTGGAACACTAAAGATGGCAAACTCACTGTTGGTAAGTCCGCCACAGATGCAACCTGTATAAAAGATGGCGTCT
CGACGGGCGCCTGCGGTAAGCAATACCTTTATGGTGGATTACGTATGGGTGGACGCAGTTATTATGCCCTGGATTTGAGC
CTATGGGATGATCAAACCAAACCAAGCTTAAAATTCTATATTGATCCTGCTTCTGGCAAAGTTTATTCATCCACCACTCC
AGAAGGAAAAAGCTTCGATGCCATCAAGTACATGGGGCAAAGCTGGTCGAAACCAACCGTGGCATGGGTGAACTGGCAGG
GCAAACGCAAACTGGTCATCTTTGTGGGTGGTGGCTACGATGCAGGTGGAAACGATGGTAATGCCAATAATGGCGGATAC
GAACAGGTCAGTTACGCTCAGAGCAATAAGATTGGTTCGGGTGTGTACATGTTTGATGCCGAAAATGGCGATCTGCTCTG
GTGGGCCAGCAATTTGGCCACCACAGCCAATACCGGTGCCACCATGGCCTTGAAAACCAACATGCAATATAGCGTCGTCA
GTCGGATCAATGCAGTAGATCGAAATGGTGATGGTTTGGTGGATCATTTGTACTTTGGTGATTTGGGCGGACAACTCTGG
CGTGTCGATATTAATAACGGCAGTAATCCTCAACAGTTTGCACAGGCAGCACAGTTGCTCGATCTGCAAAACAATAAACC
AAGTGATTTAACCGATGCCAATTTACGTTTTTATGAAGCACCTATTTTTAGTGTGTATGGATATGGCGCCAATTCACTTG
CCGTGTTGAGTATTGCAACCACTAACCGCAGTTTACCGATTAGTGATCAAAGTGCCGGGGTGGTATTTAATCTTTTCGAC
AACGATGTCACACAGGTGAGTTTTAGCACCCGTGATATGGCAGCAAACAATAAAAATTTAGTCGCTTATGCACAATTGCC
AAAATATGGGGAGCTGACCATGGTCAATCGCCCGCAATATGGTTGGTATGCCAAATTAAGCAACCAGCAAAAGGTGATGG
ATGAACCTGTGGTCATCAATAAAAACCTGTATGTGAGTATTTTTGATCCGATTGCACAAGAAGGACGTGTGGCAGATTGC
TCAATTGGTGTGCAAGGTTTGAGTAGTGTCCGTCGCTTTTGTCTGCCATATGGTGTGTGCGAAAAGTCGGCTGACCTGAC
AACAACACTTAAACTTGGAAAAGGTATTTTACCTGTGACGATTGGCGCCGGTACCACCAGCAATGGCGTAACGACCCGAC
AAATCTTGGGGGGAAGTTCAACCGATCGTGACTCGACCAAAGATGTGCTCTCAAGTACCCAAACCACGCGGCGTCAGATT
GTGCCATTAAAATGGTATGAACAGTACACCCCTTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(912-1213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Acinetobacter baylyi ADP1

74.965

99.655

0.747

Multiple sequence alignment