Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   BEN76_RS11590 Genome accession   NZ_CP016896
Coordinates   2423286..2423759 (-) Length   157 a.a.
NCBI ID   WP_076033111.1    Uniprot ID   A0A1P8EK94
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2418286..2428759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS11555 (BEN76_11555) - 2418312..2419349 (+) 1038 WP_076033108.1 lipase secretion chaperone -
  BEN76_RS11560 (BEN76_11560) - 2419484..2420455 (+) 972 WP_076033109.1 lipase family alpha/beta hydrolase -
  BEN76_RS11565 (BEN76_11565) rplS 2420523..2420894 (-) 372 WP_004934323.1 50S ribosomal protein L19 -
  BEN76_RS11570 (BEN76_11570) trmD 2421104..2421838 (-) 735 WP_004934319.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BEN76_RS11575 (BEN76_11575) rimM 2421887..2422435 (-) 549 WP_076033110.1 ribosome maturation factor RimM -
  BEN76_RS11580 (BEN76_11580) rpsP 2422453..2422710 (-) 258 WP_004934313.1 30S ribosomal protein S16 -
  BEN76_RS11585 (BEN76_11585) comF 2422852..2423286 (-) 435 WP_076033596.1 type IV pilin protein Machinery gene
  BEN76_RS11590 (BEN76_11590) comE 2423286..2423759 (-) 474 WP_076033111.1 type IV pilin protein Machinery gene
  BEN76_RS11595 (BEN76_11595) comC 2423825..2428180 (-) 4356 WP_076033112.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17084.24 Da        Isoelectric Point: 7.8065

>NTDB_id=193525 BEN76_RS11590 WP_076033111.1 2423286..2423759(-) (comE) [Acinetobacter soli strain GFJ2]
MSRSTQGFTLIELMVVVVMIAIVATIAIPSYQEYVRRSNLAAAQQEMQKIAALLERHRSRNFSYSGFALKGTADSKGPYY
DIANASDTALLLPLNSSSGSQKYTLDLSLNTQDWAIKASSADSNNYSLLLTSTGFGCKNKTTNNIDFTTCGTGSETW

Nucleotide


Download         Length: 474 bp        

>NTDB_id=193525 BEN76_RS11590 WP_076033111.1 2423286..2423759(-) (comE) [Acinetobacter soli strain GFJ2]
ATGTCGCGTAGCACGCAAGGGTTTACCTTAATTGAGCTGATGGTGGTCGTGGTCATGATTGCCATTGTTGCCACCATTGC
GATTCCGAGTTATCAGGAATATGTCCGTCGCTCTAATCTGGCAGCGGCACAGCAAGAAATGCAGAAAATTGCAGCCTTGC
TAGAACGACATCGTTCACGTAACTTTAGTTATTCAGGCTTTGCCTTAAAAGGAACAGCCGACAGTAAAGGGCCTTATTAC
GATATCGCGAATGCAAGCGATACCGCTTTACTATTGCCATTAAACAGTAGCAGTGGGTCGCAAAAATACACATTAGATCT
GAGTTTAAATACACAGGATTGGGCAATTAAAGCCAGTAGTGCCGATTCAAATAATTACTCGCTGCTTCTGACCAGTACTG
GGTTTGGCTGCAAAAATAAAACAACAAACAATATCGATTTTACGACCTGCGGTACAGGTTCGGAGACATGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-119)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8EK94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

58.48

100

0.637
  pilY2 Acinetobacter baumannii D1279779

39.264

100

0.408

Multiple sequence alignment