Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BFG52_RS01000 Genome accession   NZ_CP016895
Coordinates   239162..240064 (-) Length   300 a.a.
NCBI ID   WP_067551392.1    Uniprot ID   A0A1B2LVV3
Organism   Acinetobacter larvae strain BRTC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 234162..245064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFG52_RS00980 (BFG52_00980) - 236197..236520 (+) 324 WP_067551380.1 pyrimidine/purine nucleoside phosphorylase -
  BFG52_RS00985 (BFG52_00985) rlmB 236676..237425 (+) 750 WP_067551383.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BFG52_RS00990 (BFG52_00990) - 237484..238470 (+) 987 WP_067551386.1 DMT family transporter -
  BFG52_RS00995 (BFG52_00995) coaE 238501..239118 (-) 618 WP_067551389.1 dephospho-CoA kinase -
  BFG52_RS01000 (BFG52_01000) pilD 239162..240064 (-) 903 WP_067551392.1 A24 family peptidase Machinery gene
  BFG52_RS01005 (BFG52_01005) - 240081..241337 (-) 1257 WP_067551395.1 type II secretion system F family protein -
  BFG52_RS01010 (BFG52_01010) pilB 241347..243125 (-) 1779 WP_081408587.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BFG52_RS01015 (BFG52_01015) tpiA 243480..244271 (+) 792 WP_067551398.1 triose-phosphate isomerase -
  BFG52_RS01020 (BFG52_01020) secG 244285..244620 (+) 336 WP_067551401.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33649.83 Da        Isoelectric Point: 6.5841

>NTDB_id=193487 BFG52_RS01000 WP_067551392.1 239162..240064(-) (pilD) [Acinetobacter larvae strain BRTC-1]
MQELLIFLASSELACYSSIGLLSLCVGSFLNVVIYRIPLIMQSQWQQEYLAEQQAQHTQHTPAAEADIDTNSQPSPATMS
LSLPASHCPQCQHKIRFYHNIPLLSWLLLKGRCADCQQPIPWRYPLVEALTLLCSLWVVHVFAVSSTMLAALLLTWALIA
LSFIDLDWQLLPDRITLPLAGLGLMCNSFGLLSTAQSAIWGYVFGFLSLWMVYFLFKLFTGKEGMGYGDFKLLAALGAWL
GVEQLPLLILLSSMLGAIIGMILLKVRQDNRAFAFGPYLAIAGWITLLYGKDLMHWYWQL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=193487 BFG52_RS01000 WP_067551392.1 239162..240064(-) (pilD) [Acinetobacter larvae strain BRTC-1]
ATGCAAGAACTACTCATTTTTTTAGCCAGCTCCGAGCTTGCATGCTATAGCAGCATAGGTCTACTGAGTCTTTGTGTGGG
CAGCTTTTTAAATGTAGTGATTTACCGCATACCCTTGATCATGCAATCACAATGGCAACAAGAATATCTAGCCGAACAAC
AGGCGCAACATACACAACACACACCAGCAGCCGAAGCTGACATTGATACCAATTCACAGCCCTCACCTGCGACAATGAGT
CTTAGCTTACCGGCATCACATTGCCCACAATGTCAGCATAAGATTCGCTTTTATCATAATATTCCACTGCTGAGTTGGTT
GCTACTCAAAGGTCGTTGTGCCGATTGTCAGCAACCCATTCCTTGGCGCTATCCGCTGGTTGAAGCACTGACACTGTTGT
GCTCCTTATGGGTGGTTCATGTTTTTGCTGTCAGTAGCACCATGTTGGCTGCCTTATTGTTGACTTGGGCACTGATTGCA
CTCAGCTTTATAGATCTTGATTGGCAGCTCTTACCCGATCGCATCACCCTCCCCCTAGCCGGTTTGGGTCTAATGTGTAA
TAGCTTCGGTTTATTGAGTACAGCACAGTCAGCCATTTGGGGCTATGTCTTTGGTTTTCTAAGCTTATGGATGGTATATT
TTTTATTTAAGTTGTTTACAGGCAAAGAAGGCATGGGCTATGGCGACTTTAAACTTCTGGCCGCATTGGGTGCCTGGCTC
GGTGTAGAACAGCTGCCTTTGCTAATCTTGCTTTCATCCATGCTCGGTGCAATCATTGGAATGATTTTATTAAAAGTGCG
TCAAGATAATCGTGCTTTTGCATTTGGTCCCTACCTCGCCATTGCTGGCTGGATTACTTTACTGTATGGCAAAGACTTGA
TGCATTGGTATTGGCAACTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-141)

Type IV leader peptidase family (Peptidase_A24)

(153-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2LVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

56.566

99

0.56
  pilD Acinetobacter baumannii D1279779

56.229

99

0.557
  pilD Vibrio cholerae strain A1552

49.822

93.667

0.467
  pilD Vibrio campbellii strain DS40M4

49.11

93.667

0.46
  pilD Neisseria gonorrhoeae MS11

46.792

88.333

0.413

Multiple sequence alignment