Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   S100757_RS15015 Genome accession   NZ_CP021499
Coordinates   2804151..2805155 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis strain SRCM100757     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2799151..2810155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100757_RS14990 (S100757_02976) acuA 2800078..2800710 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  S100757_RS14995 (S100757_02977) acuB 2800737..2801381 (+) 645 WP_014480568.1 acetoin utilization AcuB family protein -
  S100757_RS15000 (S100757_02978) acuC 2801378..2802541 (+) 1164 WP_015714526.1 acetoin utilization protein AcuC -
  S100757_RS15005 (S100757_02979) motS 2802552..2803280 (-) 729 WP_041056267.1 flagellar motor protein MotS -
  S100757_RS15010 (S100757_02980) motP 2803270..2804088 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  S100757_RS15015 (S100757_02981) ccpA 2804151..2805155 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  S100757_RS15020 (S100757_02982) aroX 2805431..2806507 (-) 1077 WP_087614664.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  S100757_RS15025 (S100757_02983) ytxJ 2806743..2807069 (-) 327 WP_032726420.1 bacillithiol system redox-active protein YtxJ -
  S100757_RS15030 (S100757_02984) ytxH 2807093..2807548 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  S100757_RS15035 (S100757_02985) ytxG 2807579..2808001 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  S100757_RS15040 (S100757_02986) murC 2808163..2809461 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=193407 S100757_RS15015 WP_003229285.1 2804151..2805155(-) (ccpA) [Bacillus subtilis subsp. subtilis strain SRCM100757]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=193407 S100757_RS15015 WP_003229285.1 2804151..2805155(-) (ccpA) [Bacillus subtilis subsp. subtilis strain SRCM100757]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCGGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment