Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BEN15_RS08780 Genome accession   NZ_CP016877
Coordinates   1663046..1663858 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658046..1668858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS08750 (BEN15_08745) - 1658982..1659368 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  BEN15_RS11865 - 1659460..1660340 (-) 881 Protein_1645 GNAT family N-acetyltransferase -
  BEN15_RS08765 (BEN15_08760) yidA 1660548..1661357 (+) 810 WP_011226081.1 sugar-phosphatase -
  BEN15_RS08770 (BEN15_08765) - 1661359..1662573 (+) 1215 WP_065973253.1 aminoacyltransferase -
  BEN15_RS08775 (BEN15_08770) - 1662625..1662986 (-) 362 Protein_1648 YbaN family protein -
  BEN15_RS08780 (BEN15_08775) vicX 1663046..1663858 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  BEN15_RS08785 (BEN15_08780) vicK 1663864..1665204 (-) 1341 WP_065973254.1 cell wall metabolism sensor histidine kinase VicK Regulator
  BEN15_RS08790 (BEN15_08785) vicR 1665197..1665904 (-) 708 WP_011226084.1 response regulator YycF Regulator
  BEN15_RS08795 (BEN15_08790) - 1666431..1667198 (+) 768 WP_065973255.1 amino acid ABC transporter ATP-binding protein -
  BEN15_RS08800 (BEN15_08795) - 1667210..1668043 (+) 834 WP_002953142.1 transporter substrate-binding domain-containing protein -
  BEN15_RS08805 (BEN15_08800) - 1668061..1668759 (+) 699 WP_065973256.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=193326 BEN15_RS08780 WP_011681204.1 1663046..1663858(-) (vicX) [Streptococcus thermophilus strain KLDS 3.1003]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=193326 BEN15_RS08780 WP_011681204.1 1663046..1663858(-) (vicX) [Streptococcus thermophilus strain KLDS 3.1003]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCTGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment