Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   BE843_RS00105 Genome accession   NZ_CP016872
Coordinates   19052..19858 (+) Length   268 a.a.
NCBI ID   WP_061637208.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain FFI104     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 14052..24858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE843_RS00080 (BE843_00080) secD 14176..16032 (+) 1857 WP_011215965.1 protein translocase subunit SecD -
  BE843_RS00085 (BE843_00085) secF 16045..16962 (+) 918 WP_011215964.1 protein translocase subunit SecF -
  BE843_RS00090 (BE843_00090) - 17152..17493 (-) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BE843_RS00095 (BE843_00095) hisC 17530..18639 (-) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  BE843_RS00100 (BE843_00100) lpp1978 18799..19113 (+) 315 WP_027220533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BE843_RS00105 (BE843_00105) lpp1977 19052..19858 (+) 807 WP_061637208.1 PilW family protein Machinery gene
  BE843_RS00110 (BE843_00110) lpp1976 19855..20412 (+) 558 WP_061637207.1 hypothetical protein Machinery gene
  BE843_RS00115 (BE843_00115) - 20522..21712 (+) 1191 WP_070321972.1 murein transglycosylase A -
  BE843_RS00120 (BE843_00120) - 21836..22696 (-) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  BE843_RS00125 (BE843_00125) - 23187..23687 (+) 501 WP_011214243.1 hypothetical protein -
  BE843_RS00130 (BE843_00130) - 23767..24417 (+) 651 WP_011215956.1 lysoplasmalogenase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31532.72 Da        Isoelectric Point: 9.7469

>NTDB_id=193109 BE843_RS00105 WP_061637208.1 19052..19858(+) (lpp1977) [Legionella pneumophila subsp. pneumophila strain FFI104]
MLRGLKKASQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKPQYLKAQERLEINFDLLWIGDLLRD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVTNFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLRNGYQITLKKPLQFRYDEITYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRSVLDFSIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=193109 BE843_RS00105 WP_061637208.1 19052..19858(+) (lpp1977) [Legionella pneumophila subsp. pneumophila strain FFI104]
ATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATACCTAAAGGCACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGAGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTTGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGA
CAAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTACGCAATGGATATCAAATTACATTAAAAAAACCACT
GCAGTTTCGATACGACGAAATTACTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAAACAGAGGTCAGTATTGGATTTTTCAATTGGTAGCGATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila strain ERS1305867

100

100

1
  lpp1977 Legionella pneumophila str. Paris

99.254

100

0.993

Multiple sequence alignment