Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   BE841_RS02955 Genome accession   NZ_CP016868
Coordinates   692278..692835 (+) Length   185 a.a.
NCBI ID   WP_011215959.1    Uniprot ID   Q5WV46
Organism   Legionella pneumophila subsp. pneumophila strain FFI102     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 687278..697835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE841_RS02930 (BE841_02930) secF 688468..689385 (+) 918 WP_011215964.1 protein translocase subunit SecF -
  BE841_RS02935 (BE841_02935) - 689575..689916 (-) 342 WP_011215963.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BE841_RS02940 (BE841_02940) hisC 689953..691062 (-) 1110 WP_011215962.1 histidinol-phosphate transaminase -
  BE841_RS02945 (BE841_02945) lpp1978 691222..691536 (+) 315 WP_011215961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BE841_RS02950 (BE841_02950) lpp1977 691475..692281 (+) 807 WP_011215960.1 PilW family protein Machinery gene
  BE841_RS02955 (BE841_02955) lpp1976 692278..692835 (+) 558 WP_011215959.1 hypothetical protein Machinery gene
  BE841_RS02960 (BE841_02960) - 692945..694135 (+) 1191 WP_011215958.1 murein transglycosylase A -
  BE841_RS02965 (BE841_02965) - 694259..695119 (-) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  BE841_RS02970 (BE841_02970) - 695610..696110 (+) 501 WP_011214243.1 hypothetical protein -
  BE841_RS02975 (BE841_02975) - 696190..696840 (+) 651 WP_011215956.1 lysoplasmalogenase -
  BE841_RS02980 (BE841_02980) - 697107..697682 (+) 576 WP_230457391.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21619.06 Da        Isoelectric Point: 6.9395

>NTDB_id=193033 BE841_RS02955 WP_011215959.1 692278..692835(+) (lpp1976) [Legionella pneumophila subsp. pneumophila strain FFI102]
MKKTDSGFILLMTLCITFLMSLLVLASLQLIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYVQKDYGANK
IANELVNNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESAIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=193033 BE841_RS02955 WP_011215959.1 692278..692835(+) (lpp1976) [Legionella pneumophila subsp. pneumophila strain FFI102]
ATGAAAAAAACTGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACTGATATTCTTGCAATACAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTGGCGCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATGTGCAAAAAGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
TAACGAGTTTTCTTGCTTGGTTCTTAATAAAGATGGGCAGAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTGCCATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAAGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WV46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

97.838

100

0.978
  lpp1976 Legionella pneumophila strain ERS1305867

96.757

100

0.968

Multiple sequence alignment