Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   BFI33_RS13460 Genome accession   NZ_CP016852
Coordinates   2555884..2556267 (-) Length   127 a.a.
NCBI ID   WP_003230168.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 168G     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550884..2561267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFI33_RS13420 (BFI33_13420) sinI 2551818..2551991 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  BFI33_RS13425 (BFI33_13425) sinR 2552025..2552360 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BFI33_RS13430 (BFI33_13430) tasA 2552453..2553238 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  BFI33_RS13435 (BFI33_13435) sipW 2553302..2553874 (-) 573 WP_003246088.1 signal peptidase I SipW -
  BFI33_RS13440 (BFI33_13440) tapA 2553858..2554619 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  BFI33_RS13445 (BFI33_13445) yqzG 2554891..2555217 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  BFI33_RS13450 (BFI33_13450) spoIITA 2555259..2555438 (-) 180 WP_003230176.1 YqzE family protein -
  BFI33_RS13455 (BFI33_13455) comGG 2555509..2555883 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  BFI33_RS13460 (BFI33_13460) comGF 2555884..2556267 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  BFI33_RS13465 (BFI33_13465) comGE 2556293..2556640 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  BFI33_RS13470 (BFI33_13470) comGD 2556624..2557055 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  BFI33_RS13475 (BFI33_13475) comGC 2557045..2557341 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  BFI33_RS13480 (BFI33_13480) comGB 2557355..2558392 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  BFI33_RS13485 (BFI33_13485) comGA 2558379..2559449 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  BFI33_RS13495 (BFI33_13495) corA 2559861..2560814 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14281.37 Da        Isoelectric Point: 5.8929

>NTDB_id=192779 BFI33_RS13460 WP_003230168.1 2555884..2556267(-) (comGF) [Bacillus subtilis subsp. subtilis strain 168G]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=192779 BFI33_RS13460 WP_003230168.1 2555884..2556267(-) (comGF) [Bacillus subtilis subsp. subtilis strain 168G]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
GGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAATCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAAGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment