Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BFC23_RS13885 | Genome accession | NZ_CP016844 |
| Coordinates | 2913731..2914282 (+) | Length | 183 a.a. |
| NCBI ID | WP_010052330.1 | Uniprot ID | K8E172 |
| Organism | Carnobacterium maltaromaticum strain TMW 2.1581 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2908731..2919282
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFC23_RS13875 (BFC23_13705) | gyrA | 2910589..2913138 (+) | 2550 | WP_015075095.1 | DNA gyrase subunit A | - |
| BFC23_RS13880 (BFC23_13710) | rpsF | 2913381..2913680 (+) | 300 | WP_010052328.1 | 30S ribosomal protein S6 | - |
| BFC23_RS13885 (BFC23_13715) | ssb | 2913731..2914282 (+) | 552 | WP_010052330.1 | single-stranded DNA-binding protein | Machinery gene |
| BFC23_RS13890 (BFC23_13720) | rpsR | 2914312..2914548 (+) | 237 | WP_010052333.1 | 30S ribosomal protein S18 | - |
| BFC23_RS13895 (BFC23_13725) | - | 2914780..2916783 (+) | 2004 | WP_119906988.1 | DHH family phosphoesterase | - |
| BFC23_RS13900 (BFC23_13730) | rplI | 2916784..2917239 (+) | 456 | WP_010052338.1 | 50S ribosomal protein L9 | - |
| BFC23_RS13905 (BFC23_13735) | - | 2917368..2918759 (-) | 1392 | WP_035064936.1 | O-antigen ligase family protein | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20090.66 Da Isoelectric Point: 5.2339
>NTDB_id=192705 BFC23_RS13885 WP_010052330.1 2913731..2914282(+) (ssb) [Carnobacterium maltaromaticum strain TMW 2.1581]
MINRVVLVGRLTKDADLRYTSSGTAVASFTVAVNRQFTNQSGEREADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSMLESKSTNEQRQSHDTSGSNGGATSPSKPSQQSGGYQQNSYNSNANNQSSAPQQQYQNS
NRNEDPFASSGQPIDISDDDLPF
MINRVVLVGRLTKDADLRYTSSGTAVASFTVAVNRQFTNQSGEREADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSMLESKSTNEQRQSHDTSGSNGGATSPSKPSQQSGGYQQNSYNSNANNQSSAPQQQYQNS
NRNEDPFASSGQPIDISDDDLPF
Nucleotide
Download Length: 552 bp
>NTDB_id=192705 BFC23_RS13885 WP_010052330.1 2913731..2914282(+) (ssb) [Carnobacterium maltaromaticum strain TMW 2.1581]
ATGATTAACAGAGTTGTTTTAGTTGGAAGATTAACAAAAGATGCAGATTTACGATATACTTCTAGTGGTACAGCCGTTGC
TTCTTTTACTGTGGCAGTCAATAGACAGTTTACAAACCAGAGTGGGGAACGCGAAGCTGATTTTATCAACTGTGTAGCAT
GGAGAAAAACTGCTGAAACACTTGCTAATTTTACACGCAAAGGGTCTTTAGTTGGAGTGGAAGGTCGTATTCAAACACGG
TCTTACGATAACCAACAAGGGCAACGTGTTTATGTTACTGAGGTGGTTGTTGATACGTTCTCAATGCTTGAGTCAAAATC
AACAAATGAGCAACGTCAAAGTCATGATACAAGTGGTAGTAATGGTGGGGCAACTAGTCCTTCTAAACCTTCACAACAAT
CAGGTGGCTATCAACAAAATTCTTATAACAGCAACGCAAATAATCAATCTTCAGCTCCTCAACAACAATATCAAAATTCC
AATCGGAATGAGGATCCATTTGCTTCAAGTGGACAACCTATTGATATCTCAGATGATGACTTACCATTCTAA
ATGATTAACAGAGTTGTTTTAGTTGGAAGATTAACAAAAGATGCAGATTTACGATATACTTCTAGTGGTACAGCCGTTGC
TTCTTTTACTGTGGCAGTCAATAGACAGTTTACAAACCAGAGTGGGGAACGCGAAGCTGATTTTATCAACTGTGTAGCAT
GGAGAAAAACTGCTGAAACACTTGCTAATTTTACACGCAAAGGGTCTTTAGTTGGAGTGGAAGGTCGTATTCAAACACGG
TCTTACGATAACCAACAAGGGCAACGTGTTTATGTTACTGAGGTGGTTGTTGATACGTTCTCAATGCTTGAGTCAAAATC
AACAAATGAGCAACGTCAAAGTCATGATACAAGTGGTAGTAATGGTGGGGCAACTAGTCCTTCTAAACCTTCACAACAAT
CAGGTGGCTATCAACAAAATTCTTATAACAGCAACGCAAATAATCAATCTTCAGCTCCTCAACAACAATATCAAAATTCC
AATCGGAATGAGGATCCATTTGCTTCAAGTGGACAACCTATTGATATCTCAGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.441 |
100 |
0.645 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.738 |
100 |
0.557 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
57.923 |
0.377 |