Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EC95JB1_RS21925 Genome accession   NZ_CP021335
Coordinates   4061862..4062494 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 95JB1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4056862..4067494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC95JB1_RS21895 (EC95JB1_02733) yheS 4057031..4058944 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  EC95JB1_RS21900 (EC95JB1_02734) yheT 4058944..4059966 (+) 1023 WP_000057362.1 hydrolase -
  EC95JB1_RS21905 (EC95JB1_02735) yheU 4059960..4060178 (+) 219 WP_000907085.1 YheU family protein -
  EC95JB1_RS21910 (EC95JB1_02736) prkB 4060232..4061101 (+) 870 WP_001274680.1 phosphoribulokinase -
  EC95JB1_RS21915 (EC95JB1_02737) yhfA 4061156..4061560 (-) 405 WP_001148909.1 OsmC family protein -
  EC95JB1_RS21925 (EC95JB1_02738) crp 4061862..4062494 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  EC95JB1_RS21930 (EC95JB1_02739) yhfK 4062545..4064635 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  EC95JB1_RS21935 (EC95JB1_02740) argD 4064702..4065922 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  EC95JB1_RS21940 (EC95JB1_02741) pabA 4066008..4066571 (-) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  EC95JB1_RS21945 (EC95JB1_02742) fic 4066603..4067205 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  EC95JB1_RS21950 (EC95JB1_02743) yhfG 4067195..4067362 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=192687 EC95JB1_RS21925 WP_000242755.1 4061862..4062494(+) (crp) [Escherichia coli strain 95JB1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=192687 EC95JB1_RS21925 WP_000242755.1 4061862..4062494(+) (crp) [Escherichia coli strain 95JB1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment