Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BFC22_RS01180 | Genome accession | NZ_CP016843 |
| Coordinates | 255949..256524 (+) | Length | 191 a.a. |
| NCBI ID | WP_034572693.1 | Uniprot ID | A0A2R8A455 |
| Organism | Carnobacterium divergens strain TMW 2.1579 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 250949..261524
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFC22_RS01165 (BFC22_01160) | gyrA | 252113..254599 (+) | 2487 | WP_034572702.1 | DNA gyrase subunit A | - |
| BFC22_RS01170 (BFC22_01165) | - | 254773..255225 (-) | 453 | WP_205528181.1 | GNAT family N-acetyltransferase | - |
| BFC22_RS01175 (BFC22_01170) | rpsF | 255597..255896 (+) | 300 | WP_034572696.1 | 30S ribosomal protein S6 | - |
| BFC22_RS01180 (BFC22_01175) | ssb | 255949..256524 (+) | 576 | WP_034572693.1 | single-stranded DNA-binding protein | Machinery gene |
| BFC22_RS01185 (BFC22_01180) | rpsR | 256565..256801 (+) | 237 | WP_034572690.1 | 30S ribosomal protein S18 | - |
| BFC22_RS01190 (BFC22_01185) | - | 256966..258966 (+) | 2001 | WP_034572687.1 | DHH family phosphoesterase | - |
| BFC22_RS01195 (BFC22_01190) | rplI | 258970..259425 (+) | 456 | WP_034572684.1 | 50S ribosomal protein L9 | - |
| BFC22_RS01200 (BFC22_01195) | dnaB | 259587..260969 (+) | 1383 | WP_034573890.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21059.62 Da Isoelectric Point: 4.9463
>NTDB_id=192648 BFC22_RS01180 WP_034572693.1 255949..256524(+) (ssb) [Carnobacterium divergens strain TMW 2.1579]
MINRVVLVGRLTKDADLRYTSNGAAVASFTVAVNRQFTNQSGEREADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSLLESKSVSEQRQSHDGNSSAPTTNQNTSYSGGSSSNNQYQSGGYQQNSANNSTNNQSTA
PKQQYQNFERNDDPFATSGQQIDISDDDLPF
MINRVVLVGRLTKDADLRYTSNGAAVASFTVAVNRQFTNQSGEREADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSLLESKSVSEQRQSHDGNSSAPTTNQNTSYSGGSSSNNQYQSGGYQQNSANNSTNNQSTA
PKQQYQNFERNDDPFATSGQQIDISDDDLPF
Nucleotide
Download Length: 576 bp
>NTDB_id=192648 BFC22_RS01180 WP_034572693.1 255949..256524(+) (ssb) [Carnobacterium divergens strain TMW 2.1579]
ATGATTAATAGAGTTGTTTTAGTTGGAAGATTAACTAAAGATGCTGATTTGCGATATACTTCAAATGGCGCAGCGGTTGC
CTCATTTACAGTTGCGGTGAATAGACAATTTACGAACCAAAGCGGTGAAAGAGAAGCTGATTTTATCAACTGTGTTGCTT
GGAGAAAAACTGCTGAAACTCTAGCTAATTTTACCCGAAAAGGTTCTTTAGTTGGTGTGGAAGGCCGTATTCAAACGCGT
TCTTATGATAATCAACAAGGGCAACGTGTATACGTTACTGAAGTTGTTGTTGATACGTTCTCATTATTAGAGTCAAAATC
TGTTAGTGAACAACGTCAAAGTCATGATGGAAATAGTAGTGCGCCTACAACTAATCAAAATACTAGTTATTCTGGTGGAA
GTAGTAGCAACAACCAATACCAAAGTGGTGGTTATCAACAAAATTCAGCTAATAATAGCACGAATAATCAATCAACAGCT
CCTAAACAACAATATCAAAATTTCGAGAGAAATGATGATCCATTTGCAACAAGTGGACAACAAATTGATATCTCAGATGA
TGATTTACCATTCTAA
ATGATTAATAGAGTTGTTTTAGTTGGAAGATTAACTAAAGATGCTGATTTGCGATATACTTCAAATGGCGCAGCGGTTGC
CTCATTTACAGTTGCGGTGAATAGACAATTTACGAACCAAAGCGGTGAAAGAGAAGCTGATTTTATCAACTGTGTTGCTT
GGAGAAAAACTGCTGAAACTCTAGCTAATTTTACCCGAAAAGGTTCTTTAGTTGGTGTGGAAGGCCGTATTCAAACGCGT
TCTTATGATAATCAACAAGGGCAACGTGTATACGTTACTGAAGTTGTTGTTGATACGTTCTCATTATTAGAGTCAAAATC
TGTTAGTGAACAACGTCAAAGTCATGATGGAAATAGTAGTGCGCCTACAACTAATCAAAATACTAGTTATTCTGGTGGAA
GTAGTAGCAACAACCAATACCAAAGTGGTGGTTATCAACAAAATTCAGCTAATAATAGCACGAATAATCAATCAACAGCT
CCTAAACAACAATATCAAAATTTCGAGAGAAATGATGATCCATTTGCAACAAGTGGACAACAAATTGATATCTCAGATGA
TGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.309 |
100 |
0.613 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.545 |
100 |
0.565 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
66.038 |
55.497 |
0.366 |