Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BFC20_RS01630 Genome accession   NZ_CP016841
Coordinates   358996..359535 (-) Length   179 a.a.
NCBI ID   WP_029091941.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain TMW 2.1572     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 353996..364535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC20_RS01610 (BFC20_01595) - 354442..356421 (-) 1980 WP_069136467.1 DHH family phosphoesterase -
  BFC20_RS01615 (BFC20_01600) - 356773..357777 (+) 1005 WP_080712942.1 YitT family protein -
  BFC20_RS01620 (BFC20_01605) - 357794..358570 (+) 777 WP_069136468.1 DUF2785 domain-containing protein -
  BFC20_RS01625 (BFC20_01610) rpsR 358730..358969 (-) 240 WP_029091940.1 30S ribosomal protein S18 -
  BFC20_RS01630 (BFC20_01615) ssbA 358996..359535 (-) 540 WP_029091941.1 single-stranded DNA-binding protein Machinery gene
  BFC20_RS01635 (BFC20_01620) rpsF 359576..359866 (-) 291 WP_029091942.1 30S ribosomal protein S6 -
  BFC20_RS01640 (BFC20_01625) - 360063..360686 (-) 624 WP_119904570.1 response regulator transcription factor -
  BFC20_RS01645 (BFC20_01630) - 361254..362635 (+) 1382 Protein_334 aldehyde dehydrogenase -
  BFC20_RS01650 (BFC20_01635) - 362785..363297 (-) 513 WP_162919392.1 helix-turn-helix domain-containing protein -
  BFC20_RS12690 - 363346..363498 (-) 153 WP_162919393.1 hypothetical protein -
  BFC20_RS01655 (BFC20_01640) - 363794..364459 (-) 666 WP_029091346.1 DUF1129 domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19361.99 Da        Isoelectric Point: 4.9222

>NTDB_id=192620 BFC20_RS01630 WP_029091941.1 358996..359535(-) (ssbA) [Brochothrix thermosphacta strain TMW 2.1572]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRTFTNQQGDREADFVNCVVWRKAAENVANFLKKGSLAGVDGRLQTR
NYEANDGRRVYVTEVVAESVQFLEPRNANAGNSGASGSNQGGNNYNDDSSSYNGGNQQPQSNQGNAYNQNSQQSSKPAFS
NPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=192620 BFC20_RS01630 WP_029091941.1 358996..359535(-) (ssbA) [Brochothrix thermosphacta strain TMW 2.1572]
ATGATGAATCGTGTTGTTCTAGTGGGTCGTTTAACTAAGGATCCAGAACTTCGCTACACACCAGCTGGTGCTGCTGTAGC
CACGTTTACACTAGCTGTAAATCGTACGTTTACGAATCAACAAGGGGATCGAGAAGCTGACTTTGTTAACTGTGTCGTTT
GGCGTAAGGCGGCTGAAAACGTAGCTAATTTCTTGAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGTTTACAAACGCGT
AATTACGAAGCAAATGATGGTCGTCGCGTTTATGTAACTGAAGTGGTCGCTGAGAGTGTTCAATTTTTAGAGCCGCGTAA
TGCTAACGCAGGAAATTCAGGTGCGAGTGGAAGCAATCAAGGCGGCAACAATTATAATGACGATAGTAGTTCTTATAATG
GTGGAAATCAACAGCCACAATCAAATCAAGGAAATGCGTATAATCAAAACAGTCAACAATCGAGTAAGCCTGCTTTCAGC
AACCCGTTTGCTAGTGATGGCAAGCCAATCGATATTTCTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.715
  ssb Latilactobacillus sakei subsp. sakei 23K

58.659

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

59.218

0.38

Multiple sequence alignment