Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BFC19_RS07210 Genome accession   NZ_CP016839
Coordinates   1465107..1465646 (+) Length   179 a.a.
NCBI ID   WP_029091941.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain TMW 2.1564     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1460107..1470646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC19_RS07185 (BFC19_07130) - 1460182..1460847 (+) 666 WP_029091346.1 DUF1129 domain-containing protein -
  BFC19_RS12515 - 1461143..1461295 (+) 153 WP_162917877.1 hypothetical protein -
  BFC19_RS07190 (BFC19_07135) - 1461344..1461856 (+) 513 WP_069120667.1 helix-turn-helix domain-containing protein -
  BFC19_RS07195 (BFC19_07140) - 1462006..1463388 (-) 1383 WP_119945793.1 aldehyde dehydrogenase -
  BFC19_RS07200 (BFC19_07145) - 1463956..1464579 (+) 624 WP_119945794.1 response regulator transcription factor -
  BFC19_RS07205 (BFC19_07150) rpsF 1464776..1465066 (+) 291 WP_029091942.1 30S ribosomal protein S6 -
  BFC19_RS07210 (BFC19_07155) ssbA 1465107..1465646 (+) 540 WP_029091941.1 single-stranded DNA-binding protein Machinery gene
  BFC19_RS07215 (BFC19_07160) rpsR 1465673..1465912 (+) 240 WP_029091940.1 30S ribosomal protein S18 -
  BFC19_RS07220 (BFC19_07165) - 1466072..1466848 (-) 777 WP_029091939.1 DUF2785 domain-containing protein -
  BFC19_RS07225 (BFC19_07170) - 1466865..1467869 (-) 1005 WP_080712942.1 YitT family protein -
  BFC19_RS07230 (BFC19_07175) - 1468221..1470200 (+) 1980 WP_069136467.1 DHH family phosphoesterase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19361.99 Da        Isoelectric Point: 4.9222

>NTDB_id=192601 BFC19_RS07210 WP_029091941.1 1465107..1465646(+) (ssbA) [Brochothrix thermosphacta strain TMW 2.1564]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRTFTNQQGDREADFVNCVVWRKAAENVANFLKKGSLAGVDGRLQTR
NYEANDGRRVYVTEVVAESVQFLEPRNANAGNSGASGSNQGGNNYNDDSSSYNGGNQQPQSNQGNAYNQNSQQSSKPAFS
NPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=192601 BFC19_RS07210 WP_029091941.1 1465107..1465646(+) (ssbA) [Brochothrix thermosphacta strain TMW 2.1564]
ATGATGAATCGTGTTGTTCTAGTGGGTCGTTTAACTAAGGATCCAGAACTTCGCTACACACCAGCTGGTGCTGCTGTAGC
CACGTTTACACTAGCTGTAAATCGTACGTTTACGAATCAACAAGGGGATCGAGAAGCTGACTTTGTTAACTGTGTCGTTT
GGCGTAAGGCGGCTGAAAACGTAGCTAATTTCTTGAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGTTTACAAACGCGT
AATTACGAAGCAAATGATGGTCGTCGCGTTTATGTAACTGAAGTGGTCGCTGAGAGTGTTCAATTTTTAGAGCCGCGTAA
TGCTAACGCAGGAAATTCAGGTGCGAGTGGAAGCAATCAAGGCGGCAACAATTATAATGACGATAGTAGTTCTTATAATG
GTGGAAATCAACAGCCACAATCAAATCAAGGAAATGCGTATAATCAAAACAGTCAACAATCGAGTAAGCCTGCTTTCAGC
AACCCGTTTGCTAGTGATGGCAAGCCAATCGATATTTCTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.715
  ssb Latilactobacillus sakei subsp. sakei 23K

58.659

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

59.218

0.38

Multiple sequence alignment