Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BBD41_RS28205 Genome accession   NZ_CP016809
Coordinates   6284819..6285532 (+) Length   237 a.a.
NCBI ID   WP_099479997.1    Uniprot ID   -
Organism   Paenibacillus ihbetae strain IHBB 9852     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6279819..6290532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD41_RS28175 (BBD41_27875) - 6280071..6280976 (-) 906 WP_099479987.1 NAD-dependent epimerase/dehydratase family protein -
  BBD41_RS28180 (BBD41_27880) - 6281201..6281698 (+) 498 WP_099479989.1 DinB family protein -
  BBD41_RS28185 (BBD41_27885) - 6281767..6282093 (+) 327 WP_099479991.1 DUF2992 family protein -
  BBD41_RS28190 (BBD41_27890) - 6282245..6282976 (-) 732 WP_099479993.1 ABC transporter permease -
  BBD41_RS28195 (BBD41_27895) - 6282988..6283743 (-) 756 WP_269467199.1 ABC transporter permease -
  BBD41_RS28200 (BBD41_27900) - 6283743..6284666 (-) 924 WP_418304239.1 ABC transporter ATP-binding protein -
  BBD41_RS28205 (BBD41_27905) scnR 6284819..6285532 (+) 714 WP_099479997.1 response regulator transcription factor Regulator
  BBD41_RS28210 (BBD41_27910) - 6285532..6286926 (+) 1395 WP_099479998.1 sensor histidine kinase -
  BBD41_RS28215 (BBD41_27915) - 6286984..6287889 (-) 906 WP_099480001.1 AraC family transcriptional regulator -
  BBD41_RS28220 (BBD41_27920) - 6288075..6288812 (+) 738 WP_077566559.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26703.92 Da        Isoelectric Point: 5.0602

>NTDB_id=192388 BBD41_RS28205 WP_099479997.1 6284819..6285532(+) (scnR) [Paenibacillus ihbetae strain IHBB 9852]
MDAMKNKKILIVDDEPEIREMIERFLRKEGFFRIYAAGNSVNALAISKLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
ILFLSARGEDEDRLLGLGLGADDYIVKPFLPRELILRLFAILKRVYAANVVERLPVFRLGNKTVDLDSAVVRGTSREVSL
TAKEHAILIKLYENQGRIVTTDALCEAVWGDESFGYENTLMVHVRRIREKIEDDPSNPVFLLTVRGLGYKLLTQESN

Nucleotide


Download         Length: 714 bp        

>NTDB_id=192388 BBD41_RS28205 WP_099479997.1 6284819..6285532(+) (scnR) [Paenibacillus ihbetae strain IHBB 9852]
TTGGACGCGATGAAGAATAAAAAAATACTGATTGTTGATGACGAACCCGAGATTCGGGAAATGATTGAACGTTTTCTTCG
GAAGGAAGGCTTCTTCCGAATTTATGCCGCGGGCAATTCCGTGAACGCCTTGGCTATAAGCAAATTGGAAAAGCCTGATG
CGGCCATCTTGGATGTGATGCTGCCGGACGGAGACGGTTTTTCGCTGCTCTCTTCGATTCGGTCGTTCTCCGACATGCCG
ATACTGTTTCTATCCGCACGGGGGGAGGATGAGGACAGGCTGCTCGGGCTGGGCCTCGGTGCGGATGATTATATTGTGAA
GCCTTTTCTTCCAAGAGAGCTTATATTGCGATTGTTTGCCATTTTGAAGCGGGTCTACGCCGCCAACGTGGTGGAACGAT
TGCCTGTATTCCGTTTGGGGAACAAAACGGTGGACTTGGATAGTGCCGTCGTCCGTGGAACATCCAGAGAGGTTTCGCTG
ACAGCCAAGGAGCACGCCATACTGATAAAGCTGTACGAGAATCAGGGCAGAATCGTCACAACCGACGCATTGTGCGAAGC
TGTGTGGGGAGATGAGAGCTTCGGGTATGAGAACACGCTGATGGTGCATGTACGCCGCATTCGAGAAAAAATCGAAGATG
ATCCGTCGAATCCGGTCTTTCTGTTAACCGTTCGCGGACTTGGGTACAAACTGTTGACGCAGGAGTCCAATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.661

95.781

0.485
  micA Streptococcus pneumoniae Cp1015

41.739

97.046

0.405
  vicR Streptococcus mutans UA159

41.558

97.468

0.405

Multiple sequence alignment