Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BEN31_RS15865 Genome accession   NZ_CP016784
Coordinates   3115782..3116327 (+) Length   181 a.a.
NCBI ID   WP_034660649.1    Uniprot ID   -
Organism   Bacillus pumilus strain PDSLzg-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3110782..3121327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN31_RS15840 (BEN31_15840) - 3111786..3112196 (-) 411 WP_060597704.1 hypothetical protein -
  BEN31_RS15845 (BEN31_15845) - 3112212..3113531 (-) 1320 WP_066031463.1 hydrolase -
  BEN31_RS15850 (BEN31_15850) - 3113826..3114032 (+) 207 WP_012011910.1 DUF951 domain-containing protein -
  BEN31_RS15855 (BEN31_15855) ychF 3114249..3115349 (+) 1101 WP_034660650.1 redox-regulated ATPase YchF -
  BEN31_RS15860 (BEN31_15860) rpsF 3115458..3115745 (+) 288 WP_003215073.1 30S ribosomal protein S6 -
  BEN31_RS15865 (BEN31_15865) ssbA 3115782..3116327 (+) 546 WP_034660649.1 single-stranded DNA-binding protein SsbA Machinery gene
  BEN31_RS15870 (BEN31_15870) rpsR 3116368..3116607 (+) 240 WP_008347556.1 30S ribosomal protein S18 -
  BEN31_RS15875 (BEN31_15875) - 3116820..3117785 (+) 966 WP_066031464.1 ABC transporter ATP-binding protein -
  BEN31_RS15880 (BEN31_15880) - 3117778..3119295 (+) 1518 WP_066031465.1 ABC transporter permease/substrate-binding protein -
  BEN31_RS15885 (BEN31_15885) - 3119487..3120458 (+) 972 WP_066031466.1 ring-cleaving dioxygenase -
  BEN31_RS15890 (BEN31_15890) - 3120455..3121063 (+) 609 WP_060597699.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19733.28 Da        Isoelectric Point: 4.6109

>NTDB_id=192206 BEN31_RS15865 WP_034660649.1 3115782..3116327(+) (ssbA) [Bacillus pumilus strain PDSLzg-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=192206 BEN31_RS15865 WP_034660649.1 3115782..3116327(+) (ssbA) [Bacillus pumilus strain PDSLzg-1]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTCGGAAATGAACCAAATCAAAATCCATATGGCAATCAGAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment