Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CA929_RS04395 Genome accession   NZ_CP021277
Coordinates   911863..913935 (-) Length   690 a.a.
NCBI ID   WP_027229230.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-4058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 906863..918935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA929_RS04370 ftsB 906893..907162 (-) 270 WP_027229235.1 cell division protein FtsB -
  CA929_RS04375 eno 907386..908654 (-) 1269 WP_027229234.1 phosphopyruvate hydratase -
  CA929_RS04380 - 908682..909284 (-) 603 WP_027229233.1 Maf family protein -
  CA929_RS04385 - 909277..910035 (-) 759 WP_027229232.1 ZIP family metal transporter -
  CA929_RS04390 - 910151..911293 (-) 1143 WP_027229231.1 cation diffusion facilitator family transporter -
  CA929_RS04395 recG 911863..913935 (-) 2073 WP_027229230.1 ATP-dependent DNA helicase RecG Machinery gene
  CA929_RS04405 - 914082..915140 (+) 1059 WP_027229229.1 AI-2E family transporter -
  CA929_RS04410 argS 915252..917012 (+) 1761 WP_027229228.1 arginine--tRNA ligase -
  CA929_RS04415 - 917012..917707 (+) 696 WP_027229227.1 SPOR domain-containing protein -
  CA929_RS04420 folB 917752..918090 (-) 339 WP_027229226.1 dihydroneopterin aldolase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 78258.49 Da        Isoelectric Point: 8.3463

>NTDB_id=192067 CA929_RS04395 WP_027229230.1 911863..913935(-) (recG) [Legionella pneumophila subsp. fraseri strain D-4058]
MLSNSCEYLTGVGPTIAAKLAKCGIFTIQDLLFHLPYKYQDRTRITPIQDLRSNEWCVIAGHVCKTEIKYGKRMMLNCYV
EDKTGLVKLRFFHFNKQQVQSLNNSTMIRAFGEVRDFNNHLEMIHPEYQLLDQESDFHVEETLTPIYPTTQGLTQTRLRQ
LVKIALEQCEHELHQLEWMSEKQLQENNFYNLGEAIKLLHNPPPDISLSTLETGEHPALKRLIFDELLAQQLSMQFARQS
RSKLQAPSIPLDKAIHTRFIESLPFTLTKAQQRVFKEISHDLAQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAF
MAPTDLLSEQHTNNLHKWLEPIGVNVLRLSGKMKTTERKNALAGLQDNSCQLIVGTHALFQDKVEFARLGLVIIDEQHRF
GVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVIDEQPPGRMPITTAVLNQDKRELIIERLQAAIANG
KQAYWVCTLIEESEKLQCIAATDTSKKLQEQLPFARVGLVHGRMKTLEKEATMAAFKQGELDLLVATTVIEVGVDVPNAS
LMIVENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGF
RQFKIANLQRDKILFTILRPIAKQLTLEKPTIARQITQRWSGDFEQFLQS

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=192067 CA929_RS04395 WP_027229230.1 911863..913935(-) (recG) [Legionella pneumophila subsp. fraseri strain D-4058]
GTGCTGAGTAACTCTTGTGAATATTTAACTGGTGTTGGCCCAACCATTGCAGCAAAACTTGCTAAATGCGGGATTTTCAC
CATACAAGACCTGCTTTTCCACTTGCCTTATAAATATCAAGACAGAACCAGGATAACACCAATTCAGGATTTACGCTCTA
ATGAATGGTGTGTTATCGCAGGCCATGTATGCAAAACTGAAATTAAATACGGCAAAAGGATGATGTTAAATTGTTATGTA
GAAGATAAAACAGGCTTGGTTAAGCTCCGCTTTTTTCATTTCAACAAGCAGCAAGTTCAGTCTTTGAATAACAGCACCAT
GATTAGGGCTTTTGGTGAAGTTCGCGACTTTAACAACCATTTGGAAATGATTCACCCTGAGTATCAATTACTTGACCAGG
AATCAGACTTCCACGTGGAAGAAACGCTTACGCCAATTTATCCAACAACTCAAGGCTTAACTCAAACCCGATTAAGACAG
TTAGTTAAAATAGCCTTGGAACAATGTGAACATGAACTTCATCAATTGGAATGGATGAGTGAAAAGCAATTACAGGAAAA
CAATTTTTATAATCTGGGTGAAGCCATTAAGTTACTTCATAACCCTCCGCCTGACATCTCCCTTTCTACCCTGGAGACAG
GCGAACATCCTGCCCTCAAGCGGTTAATATTTGATGAATTGCTGGCACAACAACTCAGCATGCAATTTGCGAGACAATCA
CGTAGCAAGCTTCAAGCTCCCTCTATACCTCTTGATAAGGCTATCCATACACGCTTTATCGAATCATTGCCCTTCACTCT
TACAAAAGCGCAACAAAGAGTTTTTAAAGAAATCAGTCATGATTTAGCTCAAAGCAAACCCATGCTTCGCTTGTTACAGG
GTGACGTTGGGGCGGGTAAAACCATTATTGCGGCACTAGCTGCCCTCCAAGCTATCTCACAAGGATTCCAGGTTGCCTTT
ATGGCACCAACCGATTTATTAAGTGAACAACATACAAATAATCTCCATAAATGGTTAGAACCTATCGGTGTTAATGTATT
AAGACTGAGCGGTAAAATGAAAACCACTGAACGAAAAAATGCGCTTGCAGGCCTCCAGGATAATAGCTGCCAACTCATTG
TCGGAACCCATGCATTATTTCAGGATAAGGTGGAATTTGCTCGTTTGGGTTTAGTCATTATTGACGAACAACACCGCTTT
GGAGTAGAACAGCGGCTCCTTTTGCAACAAAAAGGGCAATTAAACCAATTAATCCCTCATCAATTATTAATGACAGCCAC
CCCTATTCCAAGAACCCTGTCAATGTCTCATTTTGCCCATTTGGATATATCGGTGATTGATGAACAACCACCTGGCCGTA
TGCCAATTACAACAGCGGTATTGAACCAGGATAAGCGCGAACTGATTATCGAACGCTTACAAGCAGCAATCGCCAACGGT
AAACAAGCTTACTGGGTATGCACTCTTATAGAAGAGTCTGAAAAATTACAATGTATAGCAGCAACAGATACCTCAAAAAA
ACTACAAGAACAGCTCCCTTTCGCACGTGTAGGTCTTGTTCATGGGAGGATGAAAACACTTGAAAAAGAGGCTACTATGG
CGGCTTTTAAACAAGGCGAGCTTGATTTATTGGTAGCAACTACTGTTATTGAAGTAGGTGTTGATGTTCCTAATGCCAGT
TTAATGATCGTTGAAAATGCAGAGAGACTTGGTTTGTCGCAGTTACATCAGTTACGAGGACGAGTCGGCAGAGGTAATAA
TCAATCTCACTGTCTTTTACTTTATCAATCGCCTCTATCACAGCAAGGTGCTGAACGTCTAAAAATCATGCGTTCAACAA
CAGATGGCTTTCTAATCTCTGAAAAGGATTTGGAGTTAAGAGGCTCAGGAGAAATACTAGGAACCAGACAAACTGGTTTT
AGGCAATTTAAAATAGCTAACTTACAACGCGATAAAATCCTCTTCACTATTTTACGCCCAATTGCAAAACAACTGACGTT
GGAAAAACCAACAATTGCCAGACAAATTACACAAAGATGGTCAGGCGACTTTGAACAATTTTTGCAAAGTTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-165)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(613-672)

Helicase conserved C-terminal domain (Helicase_C)

(469-586)

DEAD/DEAH box helicase (DEAD)

(269-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.697

97.536

0.465
  recG/mmsA Streptococcus pneumoniae R6

38.496

96.377

0.371
  recG/mmsA Streptococcus pneumoniae R36A

38.496

96.377

0.371
  recG Bacillus subtilis subsp. subtilis str. 168

38.72

95.072

0.368