Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABE41_RS20290 Genome accession   NZ_CP016761
Coordinates   4024253..4024798 (-) Length   181 a.a.
NCBI ID   WP_066294403.1    Uniprot ID   A0A4Q7QMI7
Organism   Fictibacillus arsenicus strain G25-54     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4019253..4029798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE41_RS20265 (ABE41_020265) rplI 4019888..4020331 (-) 444 WP_066294393.1 50S ribosomal protein L9 -
  ABE41_RS20270 (ABE41_020270) - 4020328..4022301 (-) 1974 WP_066294394.1 DHH family phosphoesterase -
  ABE41_RS20275 (ABE41_020275) - 4022313..4023257 (-) 945 WP_066294396.1 YybS family protein -
  ABE41_RS20280 (ABE41_020280) - 4023427..4023837 (-) 411 WP_066294399.1 VOC family protein -
  ABE41_RS20285 (ABE41_020285) rpsR 4023955..4024188 (-) 234 WP_066294401.1 30S ribosomal protein S18 -
  ABE41_RS20290 (ABE41_020290) ssbA 4024253..4024798 (-) 546 WP_066294403.1 single-stranded DNA-binding protein Machinery gene
  ABE41_RS20295 (ABE41_020295) rpsF 4024820..4025110 (-) 291 WP_066294406.1 30S ribosomal protein S6 -
  ABE41_RS20305 (ABE41_020305) ychF 4025508..4026605 (-) 1098 WP_066294408.1 redox-regulated ATPase YchF -
  ABE41_RS20310 (ABE41_020310) - 4026816..4027013 (-) 198 WP_066294410.1 DUF951 domain-containing protein -
  ABE41_RS20315 (ABE41_020315) - 4027016..4027912 (-) 897 WP_253805406.1 mechanosensitive ion channel family protein -
  ABE41_RS20320 (ABE41_020320) yyaC 4028135..4028767 (+) 633 WP_066294414.1 spore protease YyaC -
  ABE41_RS20325 (ABE41_020325) - 4028809..4029543 (-) 735 WP_066294416.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19995.79 Da        Isoelectric Point: 4.9426

>NTDB_id=191991 ABE41_RS20290 WP_066294403.1 4024253..4024798(-) (ssbA) [Fictibacillus arsenicus strain G25-54]
MLNRVVLVGRLTKDPELKYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANYLKKGSLAGVDGRVQTR
SYDNQQGQRVYVTEVMAESVQFLEPKNANAGGQQYQGGSNFGGPSNDRGFGQQNQNRSYGSDNGFGGQQQQQQNPKRNNF
NDDPFANDGTPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=191991 ABE41_RS20290 WP_066294403.1 4024253..4024798(-) (ssbA) [Fictibacillus arsenicus strain G25-54]
ATGCTAAATCGTGTAGTACTGGTGGGACGTTTAACGAAAGACCCAGAATTAAAGTACACTCCAAACGGTGTGGCAGTAGC
TAATTTCACACTTGCTGTAAATCGTCCTTTTTCGAATCAGCAAGGTGAGCGTGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGGAAGCCCGCTGAAAACGTGGCAAACTACCTGAAAAAAGGTTCTCTTGCCGGAGTGGATGGACGTGTACAAACACGT
TCTTACGATAACCAGCAGGGTCAAAGAGTCTATGTTACTGAAGTAATGGCAGAAAGTGTTCAATTCCTTGAACCTAAAAA
CGCTAACGCAGGCGGCCAGCAATATCAAGGCGGCAGCAACTTTGGTGGACCATCAAATGACCGCGGATTTGGGCAGCAAA
ATCAGAACCGCAGCTATGGAAGTGACAACGGATTTGGCGGACAGCAGCAACAGCAGCAGAACCCAAAACGTAATAACTTC
AACGATGACCCGTTTGCAAATGATGGCACGCCGATCGACATTTCTGATGACGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q7QMI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.681

100

0.691
  ssb Latilactobacillus sakei subsp. sakei 23K

56.044

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment