Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CA922_RS10280 Genome accession   NZ_CP021268
Coordinates   2254710..2256782 (+) Length   690 a.a.
NCBI ID   WP_042755220.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2249710..2261782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS10255 folB 2250559..2250897 (+) 339 WP_042755221.1 dihydroneopterin aldolase -
  CA922_RS10260 - 2250937..2251632 (-) 696 WP_011214276.1 SPOR domain-containing protein -
  CA922_RS10265 argS 2251632..2253401 (-) 1770 WP_072368793.1 arginine--tRNA ligase -
  CA922_RS10270 - 2253505..2254563 (-) 1059 WP_011214278.1 AI-2E family transporter -
  CA922_RS10280 recG 2254710..2256782 (+) 2073 WP_042755220.1 ATP-dependent DNA helicase RecG Machinery gene
  CA922_RS10285 - 2257304..2258377 (-) 1074 WP_042755218.1 hypothetical protein -
  CA922_RS10290 - 2258726..2259868 (+) 1143 WP_011214281.1 cation diffusion facilitator family transporter -
  CA922_RS10295 - 2259984..2260742 (+) 759 WP_014842075.1 ZIP family metal transporter -
  CA922_RS10300 - 2260735..2261337 (+) 603 WP_011214283.1 nucleoside triphosphate pyrophosphatase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 77952.20 Da        Isoelectric Point: 8.0455

>NTDB_id=191966 CA922_RS10280 WP_042755220.1 2254710..2256782(+) (recG) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MLSNSCEYLTGVGPTIAAKLAKCGIFTIQDLLFHLPYKYQDRTKITPIQDLRSNEWCVIAGHVCKTEIKYGKRMMLNCYV
EDKTGVVKLRFFHFNKQQIQALNNSTMIRAFGEVRGFNNQLEMIHPEYQLIDQESDFHVEETLTPIYPSTQGLTQTRLRQ
LVKIALEQSEHELHQLEWMSEKQLQENNFYDLGEAIKLLHNPPPDISLSNLEAGEHPALKRLIFDELLAQQLSMQFARQS
RSKLQAPAILFDNAIHKRFIESLPFSLTNAQQRVFKEISVDLTQSKPMLRLLQGDVGAGKTIIAALAALQAISQGFQVAF
MAPTDLLSEQHTNSLSKWLEPIGINVLRLSGKMKATERKNALAALQDNSCQLIVGTHALFQEQVEFACLGLVIIDEQHRF
GVEQRLLLQQKGQLNQLIPHQLLMTATPIPRTLSMSHFAHLDISVIDELPPGRMPITTAVLNQDKRELIIERLQAAIANG
KQAYWVCTLIEESEKLQCIAATDTSKKLQEQLSFARVGLIHGRMKALEKEATMAAFKQGEIDLLVATTVIEVGVDVPNAS
LMIIENAERLGLSQLHQLRGRVGRGNNQSHCLLLYQSPLSQQGAERLKIMRSTTDGFLISEKDLELRGSGEILGTRQTGF
RQFKIANLQRDKTLFTILRPIAKQLVLEKTAIARQITQRWLGNFEQFLQS

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=191966 CA922_RS10280 WP_042755220.1 2254710..2256782(+) (recG) [Legionella pneumophila subsp. pneumophila strain Birmingham]
GTGCTGAGTAACTCTTGTGAATATTTAACTGGCGTCGGCCCAACCATTGCAGCAAAACTTGCTAAATGTGGAATTTTCAC
GATACAAGACTTGCTTTTCCACTTGCCTTATAAATATCAAGACAGAACCAAGATAACACCAATTCAGGATTTACGCTCCA
ATGAATGGTGCGTTATCGCGGGGCATGTATGCAAAACTGAAATAAAATACGGCAAAAGGATGATGTTGAATTGCTATGTG
GAAGATAAAACAGGAGTAGTTAAGCTTCGTTTTTTTCATTTCAATAAGCAGCAAATTCAGGCTTTGAATAATAGCACCAT
GATTCGAGCTTTTGGCGAAGTCCGCGGATTTAACAACCAATTGGAGATGATTCATCCAGAATATCAATTAATTGACCAAG
AATCAGATTTCCACGTGGAAGAAACGCTTACGCCAATTTATCCATCGACTCAAGGCTTGACTCAAACCCGATTAAGGCAG
TTAGTTAAAATAGCCCTGGAACAATCTGAACACGAACTTCATCAATTGGAATGGATGAGTGAAAAACAATTACAGGAAAA
CAATTTTTATGATTTGGGCGAAGCCATTAAATTACTACATAACCCTCCACCAGATATCTCCCTCTCCAACCTCGAAGCCG
GCGAACATCCTGCTCTCAAGCGGTTAATATTTGATGAATTACTGGCACAGCAGCTCAGTATGCAATTTGCAAGACAGTCA
CGCAGCAAACTCCAAGCTCCCGCTATACTTTTCGATAATGCAATTCATAAACGTTTTATCGAATCATTGCCATTCAGTCT
TACAAACGCACAACAACGTGTTTTTAAAGAAATCAGCGTTGATTTAACTCAAAGCAAACCCATGCTTCGTTTGCTGCAAG
GAGATGTTGGGGCGGGTAAAACCATTATCGCGGCACTAGCCGCCCTTCAAGCCATTTCACAAGGATTTCAGGTTGCTTTT
ATGGCACCAACCGATTTATTAAGTGAACAACATACAAATAGCCTCAGTAAATGGTTAGAACCTATCGGTATTAATGTATT
AAGACTGAGCGGTAAAATGAAAGCCACAGAACGAAAAAATGCGCTTGCAGCCCTGCAGGACAACAGCTGTCAGCTCATTG
TTGGAACTCATGCTTTATTTCAGGAGCAAGTCGAATTCGCTTGTTTGGGTTTGGTCATTATTGACGAACAACACCGATTT
GGAGTAGAACAACGGCTCCTTCTGCAACAAAAAGGGCAATTAAACCAATTAATCCCTCATCAATTATTAATGACAGCCAC
CCCTATTCCAAGAACCCTGTCAATGTCTCATTTTGCTCATTTGGATATATCGGTCATCGATGAACTACCACCTGGACGTA
TGCCAATTACAACAGCGGTATTGAACCAGGATAAGCGTGAACTCATTATCGAACGTTTGCAAGCAGCAATCGCCAACGGC
AAACAGGCTTACTGGGTCTGTACCCTTATAGAAGAATCTGAAAAATTACAATGCATAGCAGCAACAGATACCTCAAAAAA
ATTACAAGAACAGCTCTCTTTCGCGCGTGTTGGTCTTATTCATGGGAGAATGAAAGCGCTTGAAAAAGAAGCTACTATGG
CGGCCTTTAAACAAGGCGAGATTGATTTATTGGTGGCAACTACAGTTATTGAAGTTGGTGTAGATGTTCCTAATGCCAGT
TTAATGATCATTGAAAATGCGGAGCGACTTGGTTTGTCGCAGTTACATCAATTACGCGGGCGCGTCGGCAGAGGTAATAA
TCAATCTCATTGTCTATTACTTTATCAATCTCCTCTATCACAGCAAGGTGCTGAACGTCTCAAGATCATGCGTTCAACAA
CAGACGGTTTTCTAATCTCCGAAAAGGATTTGGAGTTAAGAGGCTCAGGAGAAATATTAGGAACCAGACAGACTGGCTTT
AGACAATTTAAAATAGCTAACTTACAACGCGATAAAACCCTCTTCACTATTTTACGTCCAATTGCAAAACAACTGGTGCT
GGAAAAAACAGCAATCGCCAGACAAATTACACAACGATGGCTGGGCAATTTTGAACAATTTTTGCAAAGTTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(613-668)

Helicase conserved C-terminal domain (Helicase_C)

(469-586)

DEAD/DEAH box helicase (DEAD)

(270-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.774

97.681

0.467
  recG Bacillus subtilis subsp. subtilis str. 168

38.724

97.681

0.378
  recG/mmsA Streptococcus pneumoniae R6

38.831

96.667

0.375
  recG/mmsA Streptococcus pneumoniae R36A

38.831

96.667

0.375

Multiple sequence alignment