Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BEK99_RS11245 Genome accession   NZ_CP016760
Coordinates   2250999..2251520 (-) Length   173 a.a.
NCBI ID   WP_065865852.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2245999..2256520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEK99_RS11215 (BEK99_11215) - 2246483..2247649 (+) 1167 WP_012664063.1 ArgE/DapE family deacylase -
  BEK99_RS11220 (BEK99_11220) - 2247697..2248290 (-) 594 WP_065865851.1 histidine phosphatase family protein -
  BEK99_RS11225 (BEK99_11225) - 2248522..2249115 (-) 594 WP_012664061.1 hypothetical protein -
  BEK99_RS11230 (BEK99_11230) - 2249576..2249899 (-) 324 WP_012664060.1 antibiotic biosynthesis monooxygenase -
  BEK99_RS11235 (BEK99_11235) - 2250186..2250404 (-) 219 WP_012664059.1 hypothetical protein -
  BEK99_RS11240 (BEK99_11240) rpsR 2250700..2250942 (-) 243 WP_012664058.1 30S ribosomal protein S18 -
  BEK99_RS11245 (BEK99_11245) ssbA 2250999..2251520 (-) 522 WP_065865852.1 single-stranded DNA-binding protein Machinery gene
  BEK99_RS11250 (BEK99_11250) rpsF 2251542..2251838 (-) 297 WP_012664056.1 30S ribosomal protein S6 -
  BEK99_RS11255 (BEK99_11255) - 2251979..2253013 (-) 1035 WP_012664055.1 thermonuclease family protein -
  BEK99_RS11260 (BEK99_11260) - 2253171..2253428 (+) 258 WP_012664054.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  BEK99_RS11265 (BEK99_11265) - 2253422..2253772 (+) 351 WP_012664053.1 type II toxin-antitoxin system PemK/MazF family toxin -
  BEK99_RS11270 (BEK99_11270) argF 2254013..2255017 (+) 1005 WP_012664052.1 ornithine carbamoyltransferase -
  BEK99_RS11275 (BEK99_11275) - 2255219..2255986 (+) 768 WP_065865853.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19095.69 Da        Isoelectric Point: 5.1957

>NTDB_id=191943 BEK99_RS11245 WP_065865852.1 2250999..2251520(-) (ssbA) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
MLNRVVLVGRLTRDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQHHGGQQSGGGNQFQDYGQSYGGQQQGQNTSSYQNQNSSKSGQSDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=191943 BEK99_RS11245 WP_065865852.1 2250999..2251520(-) (ssbA) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
ATGCTTAACAGAGTTGTATTGGTAGGACGTTTAACTCGAGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACCCTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAGAATGTAAACAATTATTTGTTTAAAGGTAGTCTTGCTGGCGTTGACGGTCGCTTGCAATCACGC
AGTTACGAAAACCAAGAAGGACGTCGTATTTTTGTGACAGAAGTTGTGTGTGACAGTGTCCAATTCCTTGAACCTAAATC
ACAAAACCAACATCATGGCGGCCAACAATCTGGAGGAGGCAATCAATTCCAAGATTACGGTCAAAGTTACGGTGGACAAC
AACAAGGTCAAAATACGTCATCTTATCAAAACCAAAATTCATCAAAATCTGGACAATCTGATAATCCATTTGCAAATGCA
AACGGACCGATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

63.584

0.364

Multiple sequence alignment