Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BEK99_RS03635 Genome accession   NZ_CP016760
Coordinates   752999..753628 (+) Length   209 a.a.
NCBI ID   WP_065865303.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 747999..758628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEK99_RS03610 (BEK99_03610) - 748716..749703 (-) 988 Protein_720 FUSC family protein -
  BEK99_RS03615 (BEK99_03615) map 749955..750722 (+) 768 WP_065865301.1 type I methionyl aminopeptidase -
  BEK99_RS03620 (BEK99_03620) - 750856..751251 (+) 396 WP_015900706.1 hypothetical protein -
  BEK99_RS03625 (BEK99_03625) liaF 751267..751969 (+) 703 Protein_723 cell wall-active antibiotics response protein LiaF -
  BEK99_RS03630 (BEK99_03630) vraS 751966..753009 (+) 1044 WP_065865302.1 sensor histidine kinase Regulator
  BEK99_RS03635 (BEK99_03635) vraR 752999..753628 (+) 630 WP_065865303.1 response regulator transcription factor Regulator
  BEK99_RS03640 (BEK99_03640) - 753678..754256 (-) 579 WP_015900702.1 beta-class carbonic anhydrase -
  BEK99_RS03645 (BEK99_03645) - 754466..755542 (-) 1077 WP_065865304.1 YihY/virulence factor BrkB family protein -
  BEK99_RS03650 (BEK99_03650) - 755661..755957 (-) 297 WP_015900700.1 hypothetical protein -
  BEK99_RS03655 (BEK99_03655) - 755965..756429 (-) 465 WP_046100414.1 low molecular weight protein-tyrosine-phosphatase -
  BEK99_RS03660 (BEK99_03660) - 756665..756871 (+) 207 WP_015900698.1 DUF1128 family protein -
  BEK99_RS03665 (BEK99_03665) - 756910..758148 (+) 1239 WP_015900697.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23721.21 Da        Isoelectric Point: 4.7025

>NTDB_id=191924 BEK99_RS03635 WP_065865303.1 752999..753628(+) (vraR) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGKSGKEAIEKAHELHPDLILMDLLMEDMDGVEATQQIKKDLPNIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=191924 BEK99_RS03635 WP_065865303.1 752999..753628(+) (vraR) [Staphylococcus carnosus strain LTH 3730 SK 13 JCM 6069]
ATGACGATTAAAGTGCTATTTGTTGATGACCATGAAATGGTGCGTATCGGCATTTCAAGTTATTTATCAACACAACCAGA
TATTGAAGTAGTAGGGGAAGGTAAATCTGGTAAAGAAGCTATTGAAAAAGCACATGAACTACATCCTGATTTAATTTTGA
TGGATTTATTGATGGAGGATATGGATGGTGTTGAAGCAACACAGCAAATCAAAAAAGATTTACCGAATATTAAAGTGTTG
ATGTTAACAAGTTACATTGAAGATAACGAAGTATATCGTGCATTAGATGCAGGGGTAGACAGTTATATCCTTAAAACAAC
CAGTGCAAGCGACATTGCAGAGGCAATCAGAAAAACACAACATAATGAATCTGTATTTGAAGCGGAAGTACTCGTTAAAA
TGCGTAATCGCATGAATCAACGTGCGGAATTATATGAAATGCTAACAGATAGAGAAATGGAAATTCTTTTATTAATTGCA
AAAGGATATTCTAACCAAGAAATTGCAAGTGCATCACACATAACTATTAAAACAGTAAAAACGCATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTGATATATGCATTCCAACATGATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.378

Multiple sequence alignment