Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BCB68_RS04550 Genome accession   NZ_CP016753
Coordinates   942568..943272 (-) Length   234 a.a.
NCBI ID   WP_094079707.1    Uniprot ID   A0A222P8V8
Organism   Leptotrichia sp. oral taxon 498 strain F0590     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 937568..948272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCB68_RS04535 (BCB68_04490) - 938349..939383 (-) 1035 WP_094079704.1 RluA family pseudouridine synthase -
  BCB68_RS04540 (BCB68_04495) - 940338..941003 (-) 666 WP_094079705.1 thiamine diphosphokinase -
  BCB68_RS04545 (BCB68_04500) - 941178..942437 (-) 1260 WP_237048706.1 HAMP domain-containing sensor histidine kinase -
  BCB68_RS04550 (BCB68_04505) scnR 942568..943272 (-) 705 WP_094079707.1 response regulator transcription factor Regulator
  BCB68_RS04555 (BCB68_04510) - 943481..943825 (+) 345 WP_094079708.1 hypothetical protein -
  BCB68_RS04560 (BCB68_04515) - 944050..944988 (-) 939 WP_094079709.1 hypothetical protein -
  BCB68_RS04565 (BCB68_04520) - 945030..945527 (-) 498 WP_094079710.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  BCB68_RS04570 (BCB68_04525) - 945705..947408 (-) 1704 WP_094080771.1 AAA family ATPase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26785.15 Da        Isoelectric Point: 6.2712

>NTDB_id=191844 BCB68_RS04550 WP_094079707.1 942568..943272(-) (scnR) [Leptotrichia sp. oral taxon 498 strain F0590]
MIEKYLTNKCILIVDDEQEILDMTTSILADYGYKNIQTAKSVKETMKCVEEKQPDLAILDVMLPDGNGFELLEKLRKTSN
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKKESPIVNLNGCQIDFSRGEIIKDNKNIPLTA
KEYELLQTLYRNAGHIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=191844 BCB68_RS04550 WP_094079707.1 942568..943272(-) (scnR) [Leptotrichia sp. oral taxon 498 strain F0590]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAGCAGGAAATTTTAGATATGACTACATCAAT
TTTAGCTGATTACGGGTATAAAAATATACAGACTGCAAAAAGTGTGAAAGAAACTATGAAATGCGTTGAAGAAAAACAGC
CTGATTTAGCGATACTGGATGTTATGCTTCCAGATGGGAACGGTTTTGAATTACTGGAAAAGTTGAGAAAAACCAGTAAT
TATCCAATATTATTTCTTACAGCACGTGGAGAAGATGAGGATAAATTCAAGGGCTTTGGATTAGGAGCGGACGACTATAT
TGTGAAACCTTTTTTGCCAAAAGAGCTTTTATTCAGAATTACTGCTATTTTGCGGCGAACTTACAAAAAAGAAAGTCCAA
TTGTAAATTTAAATGGCTGTCAAATTGATTTTTCTCGTGGAGAAATTATAAAAGATAATAAAAATATACCGTTAACCGCA
AAGGAATATGAATTATTACAGACTCTTTACCGAAACGCAGGACATATTGTAACCATTGATACATTGTGTGAAGCTGTATG
GGGCGAAAATGCCTATGTTTATACAAATTCACTGATGACACATATAAGACGCATTAGAGAAAAAATTGAAATTAACCCTT
CCCATCCTGTGTCATTAATAACAATGAAAGGATTAGGCTACAAACTAATTGTGGAGGGAAAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222P8V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.018

95.299

0.496
  vicR Streptococcus mutans UA159

40.343

99.573

0.402
  micA Streptococcus pneumoniae Cp1015

38.261

98.291

0.376

Multiple sequence alignment