Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QP84_RS07660 Genome accession   NZ_CP016684
Coordinates   1504464..1505267 (-) Length   267 a.a.
NCBI ID   WP_042745105.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1499464..1510267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS07655 (QP84_007655) comA 1502187..1504406 (+) 2220 WP_152562631.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QP84_RS07660 (QP84_007660) comL 1504464..1505267 (-) 804 WP_042745105.1 outer membrane protein assembly factor BamD Machinery gene
  QP84_RS07665 (QP84_007665) rluD 1505266..1506390 (+) 1125 WP_002221257.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QP84_RS07670 (QP84_007670) - 1506542..1507489 (-) 948 WP_002221255.1 bile acid:sodium symporter family protein -
  QP84_RS07675 (QP84_007675) pgeF 1508096..1508875 (+) 780 WP_002221253.1 peptidoglycan editing factor PgeF -
  QP84_RS07680 (QP84_007680) lptE 1508927..1509406 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30826.86 Da        Isoelectric Point: 8.9351

>NTDB_id=191824 QP84_RS07660 WP_042745105.1 1504464..1505267(-) (comL) [Neisseria meningitidis strain L91543]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKMIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=191824 QP84_RS07660 WP_042745105.1 1504464..1505267(-) (comL) [Neisseria meningitidis strain L91543]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTATACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCTTTCTTGAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGTATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATGATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment