Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   QP84_RS02770 Genome accession   NZ_CP016684
Coordinates   546043..546507 (-) Length   154 a.a.
NCBI ID   WP_162818804.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541043..551507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS02730 (QP84_002730) - 541058..541303 (-) 246 WP_002226028.1 hypothetical protein -
  QP84_RS02740 (QP84_002740) - 541415..541843 (+) 429 WP_002226027.1 CopD family protein -
  QP84_RS02745 (QP84_002745) - 541855..542331 (+) 477 WP_002226026.1 CYTH domain-containing protein -
  QP84_RS02750 (QP84_002750) - 542680..543168 (-) 489 WP_002235430.1 dihydrofolate reductase -
  QP84_RS02755 (QP84_002755) aroG 543236..544291 (-) 1056 WP_002235429.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  QP84_RS13315 - 544453..544680 (-) 228 WP_153310284.1 hypothetical protein -
  QP84_RS02760 (QP84_002760) - 544958..545215 (+) 258 WP_002231679.1 membrane protein -
  QP84_RS13925 - 545264..545368 (-) 105 Protein_488 IS1595 family transposase -
  QP84_RS02765 (QP84_002765) - 545472..545678 (-) 207 WP_002220254.1 hypothetical protein -
  QP84_RS02770 (QP84_002770) comE 546043..546507 (-) 465 WP_162818804.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16533.78 Da        Isoelectric Point: 10.9695

>NTDB_id=191805 QP84_RS02770 WP_162818804.1 546043..546507(-) (comE) [Neisseria meningitidis strain L91543]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=191805 QP84_RS02770 WP_162818804.1 546043..546507(-) (comE) [Neisseria meningitidis strain L91543]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment