Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CA928_RS08750 Genome accession   NZ_CP021264
Coordinates   1947531..1948025 (-) Length   164 a.a.
NCBI ID   WP_013101531.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain D-5387     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1942531..1953025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA928_RS08730 recX 1944510..1944962 (-) 453 WP_010947526.1 recombination regulator RecX -
  CA928_RS08735 recA 1944955..1946001 (-) 1047 WP_010947527.1 recombinase RecA Machinery gene
  CA928_RS08745 - 1946304..1947239 (-) 936 WP_010947529.1 lpg1803 family Dot/Icm T4SS effector -
  CA928_RS08750 cinA 1947531..1948025 (-) 495 WP_013101531.1 CinA family protein Machinery gene
  CA928_RS08755 - 1948103..1948300 (-) 198 WP_011215777.1 hypothetical protein -
  CA928_RS08760 mutS 1948648..1951188 (+) 2541 WP_027219785.1 DNA mismatch repair protein MutS -
  CA928_RS08765 - 1951201..1952889 (+) 1689 WP_011214064.1 POTRA domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17512.07 Da        Isoelectric Point: 6.7364

>NTDB_id=191679 CA928_RS08750 WP_013101531.1 1947531..1948025(-) (cinA) [Legionella pneumophila subsp. fraseri strain D-5387]
MSHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKEEMLAVAHELIQTHGAVSEEV
ALAMAAGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLK
KVCG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=191679 CA928_RS08750 WP_013101531.1 1947531..1948025(-) (cinA) [Legionella pneumophila subsp. fraseri strain D-5387]
ATGAGTCATTTCTCGATACTGGTTGAAGAAATAGCTGCCTATTTAAAAAAGGCCAAATGGCAATTAGTGACTGCGGAATC
TTGTACTGGTGGTTTAATTGCTGCTTGCCTTACGGAAATACCTGGAAGCTCAAATTGGTTTGAGCGTGGTTTTGTTACTT
ATAGTAATTTAGCTAAAGAGGAAATGCTTGCTGTTGCTCACGAGCTAATACAAACTCATGGGGCAGTCAGTGAAGAAGTG
GCTTTGGCTATGGCTGCTGGTGCGTTACAACATAGTATGGGTAATATCGCTGTATCAGTTACTGGTATCGCAGGTCCAGA
AGGAGGCAGTATTGAAAAACCAGTAGGTACTGTATGCTTTGCCTGGGCAGTTCACCATCAATTTCAACAAACATCAAGAC
AACAATTCACTGGAAGTCGGCAAGAAATACGTTTGTCTGCCTGTCAATATGCTTTAAATGGAGTTCTTTCTACTCTTAAA
AAAGTCTGTGGCTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae D39

38.217

95.732

0.366
  cinA Streptococcus pneumoniae R36A

38.217

95.732

0.366
  cinA Streptococcus pneumoniae Rx1

38.217

95.732

0.366
  cinA Streptococcus pneumoniae R6

38.217

95.732

0.366

Multiple sequence alignment