Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L86_RS04975 Genome accession   NZ_CP016678
Coordinates   935552..936151 (+) Length   199 a.a.
NCBI ID   WP_002248501.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25419     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930552..941151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L86_RS04950 (A6L86_04950) - 930867..931454 (-) 588 WP_002248497.1 superoxide dismutase -
  A6L86_RS04955 (A6L86_04955) dnaB 931617..933023 (+) 1407 WP_002248498.1 replicative DNA helicase -
  A6L86_RS04960 (A6L86_04960) pilH 933332..934000 (+) 669 WP_065826233.1 GspH/FimT family pseudopilin Machinery gene
  A6L86_RS04965 (A6L86_04965) pilV 934024..934638 (+) 615 WP_065826234.1 type IV pilus modification protein PilV Machinery gene
  A6L86_RS04970 (A6L86_04970) pilJ 934635..935573 (+) 939 WP_042744699.1 PilW family protein Machinery gene
  A6L86_RS04975 (A6L86_04975) pilK 935552..936151 (+) 600 WP_002248501.1 pilus assembly PilX family protein Machinery gene
  A6L86_RS04980 (A6L86_04980) pilX 936156..936629 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L86_RS04985 (A6L86_04985) - 938736..939164 (-) 429 Protein_939 AzlC family ABC transporter permease -
  A6L86_RS04990 (A6L86_04990) dut 939307..939759 (+) 453 WP_002220679.1 dUTP diphosphatase -
  A6L86_RS04995 (A6L86_04995) dapC 939835..941022 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21935.90 Da        Isoelectric Point: 6.9099

>NTDB_id=191531 A6L86_RS04975 WP_002248501.1 935552..936151(+) (pilK) [Neisseria meningitidis strain M25419]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISTNESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPIVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPHYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=191531 A6L86_RS04975 WP_002248501.1 935552..936151(+) (pilK) [Neisseria meningitidis strain M25419]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTACCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCACACTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.222

100

0.869

Multiple sequence alignment