Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L86_RS04960 Genome accession   NZ_CP016678
Coordinates   933332..934000 (+) Length   222 a.a.
NCBI ID   WP_065826233.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25419     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 928332..939000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L86_RS04940 (A6L86_04940) - 929122..929454 (+) 333 WP_002226445.1 hypothetical protein -
  A6L86_RS04945 (A6L86_04945) - 929786..930295 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L86_RS04950 (A6L86_04950) - 930867..931454 (-) 588 WP_002248497.1 superoxide dismutase -
  A6L86_RS04955 (A6L86_04955) dnaB 931617..933023 (+) 1407 WP_002248498.1 replicative DNA helicase -
  A6L86_RS04960 (A6L86_04960) pilH 933332..934000 (+) 669 WP_065826233.1 GspH/FimT family pseudopilin Machinery gene
  A6L86_RS04965 (A6L86_04965) pilV 934024..934638 (+) 615 WP_065826234.1 type IV pilus modification protein PilV Machinery gene
  A6L86_RS04970 (A6L86_04970) pilJ 934635..935573 (+) 939 WP_042744699.1 PilW family protein Machinery gene
  A6L86_RS04975 (A6L86_04975) pilK 935552..936151 (+) 600 WP_002248501.1 pilus assembly PilX family protein Machinery gene
  A6L86_RS04980 (A6L86_04980) pilX 936156..936629 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24771.30 Da        Isoelectric Point: 9.3776

>NTDB_id=191528 A6L86_RS04960 WP_065826233.1 933332..934000(+) (pilH) [Neisseria meningitidis strain M25419]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDDDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTMCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=191528 A6L86_RS04960 WP_065826233.1 933332..934000(+) (pilH) [Neisseria meningitidis strain M25419]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACGATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

83.71

99.55

0.833

Multiple sequence alignment