Detailed information NTG0191528

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA931_RS06675
• Genome accession: NZ_CP021262
• Coordinates: 1427238..1428263 (+)
• Length: 341 a.a.
• NCBI ID: WP_027221482.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pascullei strain U8W (D-7160)
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1422238..1433263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA931_RS06645	-	1422668..1422985 (+)	318	WP_027221476.1	DUF2845 domain-containing protein	-
CA931_RS06650	-	1423022..1423393 (+)	372	WP_027221477.1	protease inhibitor I42 family protein	-
CA931_RS06655	-	1423448..1425166 (-)	1719	WP_027221478.1	NAD-dependent malic enzyme	-
CA931_RS06660	-	1425246..1425629 (+)	384	WP_027221479.1	hypothetical protein	-
CA931_RS06665	surE	1425632..1426390 (+)	759	WP_027221480.1	5'/3'-nucleotidase SurE	-
CA931_RS06670	-	1426409..1427152 (+)	744	WP_027221481.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA931_RS06675	rpoS	1427238..1428263 (+)	1026	WP_027221482.1	RNA polymerase sigma factor RpoS	Regulator
CA931_RS06680	hmgA	1428406..1429656 (-)	1251	WP_027221483.1	homogentisate 1,2-dioxygenase	-
CA931_RS06685	-	1429804..1430547 (+)	744	WP_027221484.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA931_RS06690	ruvC	1430547..1431071 (+)	525	WP_027221485.1	crossover junction endodeoxyribonuclease RuvC	-
CA931_RS06695	ruvA	1431068..1431667 (+)	600	WP_027221486.1	Holliday junction branch migration protein RuvA	Machinery gene
CA931_RS06700	-	1431728..1432033 (+)	306	WP_231955182.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39447.72 Da
• Isoelectric Point: 4.3759

>NTDB_id=191528 CA931_RS06675 WP_027221482.1 1427238..1428263(+) (rpoS) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKIEEELDEFPEFVDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=191528 CA931_RS06675 WP_027221482.1 1427238..1428263(+) (rpoS) [Legionella pneumophila subsp. pascullei strain U8W (D-7160)]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTCTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATTGAAGAAGAGCTTGATGAGTTTCCAGAGTTTGTTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCTACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCATTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAACCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGATTCCGTTTTTCAACTTATGCTACC
TGGTGGATTAGGCAAACTATAGAACGTGCTATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAGCCCTCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAACCTTTGGAGGATGTTCAAAAATTATTGGGCTTGAATGATAAAGTAGCTTCAGTTGATACGCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACACTAAGAACCTTGTTGGAGCGGGTTGGATTAACACAAGAGGATTTATTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548